RNA id: TCONS_00010937



Basic Information


Item Value
RNA id TCONS_00010937
length 811
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_004731
representative True

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25201543 ~ 25214727 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CAGTTGAGAAACTCAGAGGAGAGACTTCGCACACAGCGTGCTGAGCGGAATTTGAGTTCGTGGTAGCACTGCACGAAGCTGTGGTAGATGAAGCTCGTCAACACGAATGAAAACACATACCTGAACCCTGAGACAAACAGAGGCCACTGTGGAATATGGAATCAAGACTCTACTGGATACATAAAGAAAAAACCTTAGGCTGTACTCACACATACTTCCAGACAGAGAGAGACGGGGACAAGGGAATACCCAAAATGACAATTTGACAGGGAATATGAAAACAAGACTGGACTTTTTCTTCTTTGATGGAGAGTATTATGTAGATGTCATGTCCACATGACAAAATGTCTGTACATGGAATATGGAAAAGCTTATTTTAATCATTTCTAAAACTGGTCAAAATGCAGAGGAGACATTGCATGGGAGCACTGGAACAGAATTTGTCATCGCAACATTGTTTTTGAACTATTGAACTACAtggataaaattaaaaaaaaaaactatgtatcCAAAAAACTATAatgatgcactgaaaaaaatgcttttctaacttatcttttttgtcttgtttcttgtctacatatctaaaaattcttcaattaagaagcattttctagaaaagcaaaacaaaagctcTTGTTTTAAGGTTTAATGTGCCAAATTAAGTAAGCTTTTCCACAAGCTAAGTAATCTGCCACTGGGTTAAgataaaataatcttatgtcaaaacaaggaacaagaatattttgcttattttgctGGATTTAAGGAAAACTTACTTAGttttgatatattatttattaaaacaagg

Function


GO:

id name namespace
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0004535 poly(A)-specific ribonuclease activity molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00009368 lncRNA upstream 134891 25073305 ~ 25075120 (+) False XLOC_004728
TCONS_00010739 lncRNA upstream 134891 25073518 ~ 25075120 (+) True XLOC_004728
TCONS_00010738 lncRNA upstream 265507 24944172 ~ 24944504 (+) True XLOC_004726
TCONS_00010737 lncRNA upstream 1350579 23812530 ~ 23859432 (+) False XLOC_004717
TCONS_00010736 lncRNA upstream 1430834 23778952 ~ 23779177 (+) True XLOC_004716
TCONS_00009376 lncRNA downstream 97291 25312018 ~ 25420721 (+) False XLOC_004733
TCONS_00010938 lncRNA downstream 165362 25380089 ~ 25430371 (+) False XLOC_004733
TCONS_00010740 lncRNA downstream 165410 25380137 ~ 25387670 (+) False XLOC_004733
TCONS_00010939 lncRNA downstream 165441 25380168 ~ 25408520 (+) False XLOC_004733
TCONS_00010741 lncRNA downstream 167550 25382277 ~ 25389591 (+) True XLOC_004733
TCONS_00009370 mRNA upstream 99037 25097754 ~ 25110974 (+) True XLOC_004730
TCONS_00009369 mRNA upstream 117441 25085751 ~ 25092570 (+) True XLOC_004729
TCONS_00009367 mRNA upstream 251219 24952902 ~ 24958792 (+) False XLOC_004727
TCONS_00009366 mRNA upstream 251219 24952902 ~ 24958792 (+) True XLOC_004727
TCONS_00009365 mRNA upstream 439821 24738962 ~ 24770190 (+) True XLOC_004725
TCONS_00009373 mRNA downstream 9116 25223843 ~ 25267129 (+) False XLOC_004732
TCONS_00009374 mRNA downstream 9146 25223873 ~ 25267131 (+) False XLOC_004732
TCONS_00009375 mRNA downstream 9146 25223873 ~ 25284510 (+) True XLOC_004732
TCONS_00009378 mRNA downstream 217900 25432627 ~ 25485309 (+) False XLOC_004734
TCONS_00009379 mRNA downstream 252833 25467560 ~ 25487244 (+) False XLOC_004734
TCONS_00009364 other upstream 644419 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 791671 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009355 other upstream 864518 24342331 ~ 24345493 (+) False XLOC_004722
TCONS_00009353 other upstream 995494 24214401 ~ 24214517 (+) True XLOC_004721
TCONS_00009349 other upstream 1277996 23923325 ~ 23932015 (+) True XLOC_004717
TCONS_00009372 other downstream 9072 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009380 other downstream 253585 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009383 other downstream 433400 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009419 other downstream 1920142 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 1942216 27156943 ~ 27163064 (+) False XLOC_004764

Expression Profile


//