RNA id: AMCG00017638


Basic Information

Item Value
RNA id AMCG00017638
length 2418
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00017638
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14760068 ~ 14764832 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCCGCAGCGGACAGACTGTTGATCATTCGCAGGGAGACCCGCAGTGTCAGGCTGGTGCGACCCGCTGCAGACAGAGATTTACCATTTCCTCGCTTCGGAAGGTGGACAGAGGATCCGCAGCCCTGCATTCGAAAGAGGACAACGTGTATTTCACCATGAACTCCGATATGGATGGTGACACTGAGAACCAGgtggagctggaggagaagaCACGGCTCATTAATCAAGTGCTAGAGCTGCAGCACACCCTAGAAGATCTGTCTGCTCGAGTGGACGCAGTGAAAGAAGAAAACCTCAAGCTGAAGTCTGAAAACCAGGTGCTGGGACAGTATATCGAGAACCTTATGTCTGCCTCGAGCGTCTTCCAGACGACTGACACAAAAAGCAAACGAAAGTAAGGGActgcctccctcctcccctcccccgaCCACCACCGACcatgtttacatttgttaactgtcattaaaatgcacattaagCTTTGTTaaggtcttttttttgtttgtttgtctttttactgtttttatgtttcgttttgtttgtttaaaccCCTAGCTCATATCATGCACAGCATTATGTATAGGTTTGGACTTTCCAGAGGCACACGTTTTTTAGGGTCTACATTCAATCCCTTTTTCTGAACTGTTGGAGAGACGGTTTCTCCTCCAGATTGACATTTCTCTCACTGTATCGGTTAACTCTCAAATGGAAAAGACTGTTTTGAGCTGTTAGTGTCCAGGCTTGTATATACTTCAAGAATGTCTTTAAACTGGAATTTGATTGATCTCATTGCAATTGATTAGAATAGGCTTCACAACTGTGAAGGTAATTTGCTAATGCTTGATTTTAGtctaaatgtttttatgttcattATTACATTGCTATTGTGCCATCTGTGGTTGGGAGGCCACAATGTTCCTCACTGGACACCCTAGATCTGTGCAACTGTATAAAAATCAAATTAGCCTCAAGCAGAATCTGGGATATTTTCTCAAATTACACAAGTTTATTTACTTGGCAAAAAGAGCAAACCTATTTTACATCTCGCAACCCACCAAGTATAAACTATAACCCCTGTATTTGATGCCAGCATTTTACTGATGCTATATTAAGCTGTCCATTTTAGATTACGACCATGCGACTCTTACTAAAACATTATTTCCTGCCATTTTGTCTTAACATACTATCAGTTGATGTgatctatttattcatattactgTTGCAggtgaaatgttttactgcagaaatgtgtaaaagcacagaaatgttaaaaccacaatatttatttattgtgtacaGGCCTAAATGCAATGAAGTGATGTTACATCTTGTACAGTTTAGAATATTCCATACTGGGtcaaaaaatgaaacttttaGCACAATGGCAACAATGCCACTCACATACTGTACAACAGTTATTACATTTGAACTGAACCGTCATCCAGAATAGACATAAAGAAGACTGTAGGGTCAAATAGATCGATATGTTGTATTTTGATTCAGTAAATGTATTGCACATGTATGTATAGGCAAATTAATAGTAGTGTTACAACATAAATCATCTtctatgaattacattttttacttttgaggGACACTACAGCTTTTGTAGAAGAAATGGACGTTGTTGATATGGAAAAACAATGTGACCCAACATTCTTGCCCTGGGTTTGCAAAACAGTCGCTTCCATTTCAGATTGCTGGAGTTTGATTGTTAATAGGGTTTGGACTTTCCTAATGATTTACAGAGATGCCATTGACAAATTCatcataacaaaatacaaattatatgataatattcatttaaaagaagaaagtgaGGCTCCATTTTGAATTTGCAGTGCATTGTGACGATTAAGATATGATGAATAGTTAGTTATAAGGCATGAAGAGAAGCTGACAAACACCAGGTGATGGAGTGTGCCAGTCCCGATAAGGTGTCGCTAGCTTTGTGGTGCCAGTTTTACATGGAATTGAGTTGAAATGGATGGCAGAGCACTTCTGTCAAAATGCTAAACAAATCTATTCTGTACTGCTTGTTAAGCTTGGTGGGGACTAGTGATTGGTGGTTGAATTTAAAACTTTAGTTCATTAGCATGGTCAAATGAAAGTGGTGAAGACGCCAGTAACAATAGAAGAGTATCTTGCGAGATTCCTGCCTATTAAAACTGTACCGTCCCTTCATCAGAAAAGGACTCCTCCAGTGCTCTGATTATAGCCGAGAATGTCATCACTTGTTTGATTTGAAAATCATGTTAAAACGTTATCTAATAATTTCAACTCTGACCTGTAACCAGATCCTACACACCCCGAGACAATATTGCCTTGTGTGTagattgtgtacattttattactgTGTTGCCTTTGAAccgtttttgttttaataaaatacatttttgcttttgcatCAGTCA

Function

GO: NA

KEGG:

id description
K20316 SCOC; short coiled-coil protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114571 lncRNA downstream 715541 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 2103735 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 2238854 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 2238854 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 2250925 12506627 ~ 12509143 (-) True G91556
TU114762 lncRNA upstream 35258 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 159561 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 289631 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 290460 15055292 ~ 15056623 (-) True G92050
TU114820 lncRNA upstream 292111 15056943 ~ 15057146 (-) True G92051
AMCG00017639 mRNA downstream 83993 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017632 mRNA downstream 102580 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017634 mRNA downstream 147473 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017635 mRNA downstream 159452 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017633 mRNA downstream 207811 14530796 ~ 14552257 (-) True AMCG00017633
AMCG00017646 mRNA upstream 238614 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017645 mRNA upstream 278838 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017647 mRNA upstream 298595 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017648 mRNA upstream 310991 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017660 mRNA upstream 448665 15213497 ~ 15213745 (-) True AMCG00017660
TU114641 other downstream 280281 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4262964 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6004161 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6245113 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6763473 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 1102115 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1265570 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1265624 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2703773 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3697952 18462784 ~ 18463176 (-) True G92436

Expression Profile