RNA id: TU114757


Basic Information

Item Value
RNA id TU114757
length 2392
lncRNA type sense_over
GC content 0.39
exon number 4
gene id AMCG00017638
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14760068 ~ 14764832 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGACTGTTGATCATTCGCAGGGAGACCCGCAGTGTCAGGCTGGTGCGACCCGCTGCAGACAGAGATTTACCATTTCCTCGCTTCGGAAGGTGGACAGAGGATCCGCAGCCCTGCATTCGAAAGAGGACAACGTGTATTTCACCATGAACTCCGATATGGATGGTGACACTGAGAACCAGgtggagctggaggagaagaCACGGCTCATTAATCAAGTGCTAGAGCTGCAGCACACCCTAGAAGATCTGTCTGCTCGAGTGGACGCAGTGAAAGAAGAAAACCTCAAGCTGAAGTCTGAAAACCAGGTGCTGGGACAGTATATCGAGAACCTTATGTCTGCCTCGAGCGTCTTCCAGACGACTGACACAAAAAGCAAACGAAAGTAAGGGActgcctccctcctcccctcccccgaCCACCACCGACcatgtttacatttgttaactgtcattaaaatgcacattaagCTTTGTTaaggtcttttttttgtttgtttgtctttttactgtttttatgtttcgttttgtttgtttaaaccCCTAGCTCATATCATGCACAGCATTATGTATAGGTTTGGACTTTCCAGAGGCACACGTTTTTTAGGGTCTACATTCAATCCCTTTTTCTGAACTGTTGGAGAGACGGTTTCTCCTCCAGATTGACATTTCTCTCACTGTATCGGTTAACTCTCAAATGGAAAAGACTGTTTTGAGCTGTTAGTGTCCAGGCTTGTATATACTTCAAGAATGTCTTTAAACTGGAATTTGATTGATCTCATTGCAATTGATTAGAATAGGCTTCACAACTGTGAAGGTAATTTGCTAATGCTTGATTTTAGtctaaatgtttttatgttcattATTACATTGCTATTGTGCCATCTGTGGTTGGGAGGCCACAATGTTCCTCACTGGACACCCTAGATCTGTGCAACTGTATAAAAATCAAATTAGCCTCAAGCAGAATCTGGGATATTTTCTCAAATTACACAAGTTTATTTACTTGGCAAAAAGAGCAAACCTATTTTACATCTCGCAACCCACCAAGTATAAACTATAACCCCTGTATTTGATGCCAGCATTTTACTGATGCTATATTAAGCTGTCCATTTTAGATTACGACCATGCGACTCTTACTAAAACATTATTTCCTGCCATTTTGTCTTAACATACTATCAGTTGATGTgatctatttattcatattactgTTGCAggtgaaatgttttactgcagaaatgtgtaaaagcacagaaatgttaaaaccacaatatttatttattgtgtacaGGCCTAAATGCAATGAAGTGATGTTACATCTTGTACAGTTTAGAATATTCCATACTGGGtcaaaaaatgaaacttttaGCACAATGGCAACAATGCCACTCACATACTGTACAACAGTTATTACATTTGAACTGAACCGTCATCCAGAATAGACATAAAGAAGACTGTAGGGTCAAATAGATCGATATGTTGTATTTTGATTCAGTAAATGTATTGCACATGTATGTATAGGCAAATTAATAGTAGTGTTACAACATAAATCATCTtctatgaattacattttttacttttgaggGACACTACAGCTTTTGTAGAAGAAATGGACGTTGTTGATATGGAAAAACAATGTGACCCAACATTCTTGCCCTGGGTTTGCAAAACAGTCGCTTCCATTTCAGATTGCTGGAGTTTGATTGTTAATAGGGTTTGGACTTTCCTAATGATTTACAGAGATGCCATTGACAAATTCatcataacaaaatacaaattatatgataatattcatttaaaagaagaaagtgaGGCTCCATTTTGAATTTGCAGTGCATTGTGACGATTAAGATATGATGAATAGTTAGTTATAAGGCATGAAGAGAAGCTGACAAACACCAGGTGATGGAGTGTGCCAGTCCCGATAAGGTGTCGCTAGCTTTGTGGTGCCAGTTTTACATGGAATTGAGTTGAAATGGATGGCAGAGCACTTCTGTCAAAATGCTAAACAAATCTATTCTGTACTGCTTGTTAAGCTTGGTGGGGACTAGTGATTGGTGGTTGAATTTAAAACTTTAGTTCATTAGCATGGTCAAATGAAAGTGGTGAAGACGCCAGTAACAATAGAAGAGTATCTTGCGAGATTCCTGCCTATTAAAACTGTACCGTCCCTTCATCAGAAAAGGACTCCTCCAGTGCTCTGATTATAGCCGAGAATGTCATCACTTGTTTGATTTGAAAATCATGTTAAAACGTTATCTAATAATTTCAACTCTGACCTGTAACCAGATCCTACACACCCCGAGACAATATTGCCTTGTGTGTagattgtgtacattttattactgTGTTGCCTTTGAAccgtttttgttttaataaaatacatttttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114571 lncRNA downstream 715554 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 2103748 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 2238867 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 2238867 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 2250938 12506627 ~ 12509143 (-) True G91556
TU114762 lncRNA upstream 35271 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 159574 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 289644 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 290473 15055292 ~ 15056623 (-) True G92050
TU114820 lncRNA upstream 292124 15056943 ~ 15057146 (-) True G92051
AMCG00017639 mRNA downstream 84006 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017632 mRNA downstream 102593 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017634 mRNA downstream 147486 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017635 mRNA downstream 159465 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017633 mRNA downstream 207824 14530796 ~ 14552257 (-) True AMCG00017633
AMCG00017646 mRNA upstream 238627 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017645 mRNA upstream 278851 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017647 mRNA upstream 298608 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017648 mRNA upstream 311004 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017660 mRNA upstream 448678 15213497 ~ 15213745 (-) True AMCG00017660
TU114641 other downstream 280294 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4262977 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6004174 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6245126 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6763486 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 1102128 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1265583 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1265637 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2703786 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3697965 18462784 ~ 18463176 (-) True G92436

Expression Profile