RNA id: AMCG00017639


Basic Information

Item Value
RNA id AMCG00017639
length 1344
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00017639
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14664881 ~ 14676075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aATTGTTCACGAATATCTCAGCGGTGCCCCATTTTCCCAATTTCAAGAAACCATGTATTTTTCACGTTTCTTGCAATGGAAGTGGTTGGAGAgaGTTACAGCTGTTACCTGCATAATAATTACTTTTCCTCGTGTTTATTTCTGTCCAGGCAACCTGTAACCAAAAATACCTTCAGACATTACAGAGTACTAGGGAAAGGCGGGTTTGGAGAGGTTTGTGCCTGCCAAGTCCGAGCTACCGGTAAGATGTACGCCTGTAAAAAgctggaaaagaaaagagtAAAGAAGAGAAAAGGTGAAGCAATGGCATTAAACGAAAAACGCATTTTAGAAAAAGTTAACAGTAGTTTTGTAGTTAGTTTAGCCTACGCCTATGAAACCAAGGATGCCCTGTGTTTAGTGTTAACCATCATGAATGGCGGAGACTTGAAATTCCACATTTACAACATGGGAAACTCTGGCTTTGACGAGCAGAGGGCCATTTTCTATGCGGCAGAGATCTGCTGTGGGCTGGAGGATCTTCACAGAGAGCGAATAGTGTACAGGGATTTGAAGCCTGAGAATATTCTTTTAGATGACCGTGggcATATCCGTATATCAGACCTGGGGTTGGCCGTCCAAATTCCAGAAGGAGAGACAATACGAGGGCGAGTGGGCACTGTTGGGTATATGGCTCCGGAGGTGATCCAGAACGAGAGCTACACGTTCAGCCCGGACTGGTGGGGACTCGGCTGCCTGATATTTGAGATGATCCAGGGCCAGTCGCCCTTTCGCCGGCGCAAGGAGCGGGTGAAGCGGGAGGAGGTGGATCGGCGGGTGCGCGAGGACCTGGAGGACTATTCAGACAAGTTCTCTGAGGAGGCCAAGGACATCTGCAGGATGTTGCTTGCCAAAGACCCCAGAGAGCGCCTCGGTTGCCAGGGCCGAGGAGGAGTGGAAGTGAAGCAGCATCGCATCTTTAAAAGCATCAACTTCAAGCGGCTGGAGGCCAACATGCTGGAGCCACCTTTCAGTCCCGATCCTCGAGCAGTTTACTGCAAAGACGTCCTGGATATCGAACAGTTCTCCACAGTCAAAGGAGTCAATCTGGACCCCACAGACGACGATTTCTATCACAAGTTTGTAACAGGCAGTGTCTCCATCCCCTGGCAAAATGAGATGATTGAGATGGAGTGCTTCAAAGAAATCAATGTGTATGAGACAGATGGCACCCTGTGTTCAGATTTAGATGTAAATAGGCCAAATCCCCCGCCAAAGAGAGGTTTCTTTTACAGACTTTTCAGGAGAGAGGTCTGCTTTAAGAGTGGCTACAGCGATGACGAAGAGGAGCCCTCTCGAATTTAA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114571 lncRNA downstream 620354 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 2008548 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 2143667 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 2143667 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 2155738 12506627 ~ 12509143 (-) True G91556
TU114757 lncRNA upstream 84006 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 124015 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 248318 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 378388 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 379217 15055292 ~ 15056623 (-) True G92050
AMCG00017632 mRNA downstream 7393 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017634 mRNA downstream 52286 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017635 mRNA downstream 64265 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017633 mRNA downstream 112624 14530796 ~ 14552257 (-) True AMCG00017633
AMCG00017630 mRNA downstream 141606 14507573 ~ 14523275 (-) True AMCG00017630
AMCG00017638 mRNA upstream 83993 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017646 mRNA upstream 327371 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017645 mRNA upstream 367595 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017647 mRNA upstream 387352 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017648 mRNA upstream 399748 15075823 ~ 15080306 (-) True AMCG00017648
TU114641 other downstream 185094 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4167777 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5908974 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6149926 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6668286 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 1190872 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1354327 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1354381 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2792530 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3786709 18462784 ~ 18463176 (-) True G92436

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001710 False 2576 mRNA 0.47 17 NC_007112.7 11902582 ~ 11973341 (-)
grasscarp (Ctenopharyngodon idella) TU470141 True 1091 lncRNA 0.47 8 CI01000300 2493449 ~ 2505501 (+)
mexican tetra (Astyanax mexicanus) TU470141 True 324 lncRNA 0.31 2 NW_019172946.1 885416 ~ 886507 (+)