RNA id: AMCG00017641


Basic Information

Item Value
RNA id AMCG00017641
length 1695
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00017641
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14922262 ~ 14931595 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCACTCTTCTGTGGGTAGTAATCTCGAGTCAAAAGATAAGAAGGAGCTTCAAGAAACTGTGAAAAGGAAACTGGACAGTGCGCGATCACCTCTGAATGGGGACCAGAATGGTATTTGTGATGGGAATTTTTCACCAAATACAAAACGTCTCCGAAAGGAAGGGCCCAGCCTGGACTCATTGGCAGGATTGCCTAGTAATGGGCCCCCTGTGCCCTCTGTATCACCCCTTCACCAGATTGATATCAAGCCTACATTACCCATGAACAATGCCAACAGTGGCAACAACCATGTCCCCGGCCGGCCGGATGACCTGGGCAAAAATGGAGGGTTGCAGGATATCAAGCTGCAGGTCAATGGCACCTTGGACGATGGATTCAGTCTAATTCAGAGTAAGGATATGAAGCCAGAGCCCTTAGATGATGCCACAGGGATCGAGTCCCCTGACAGCTCGCTCTCGAACCAGAACAAGCTCTTCTCGGACATCAACCTTAATGACCAGGAATGGCAGGAGCTTATTGATGAGCTGGCCAATACTGTGGCTGAAGATGACATGCACGACCTATTCAATGAAGACTTTGAAGACAAAAAGGAGGTAGAGTTCACTAGGCCAGCTGCCCAAACCCCTCTCCTGCAGGAACCCGCCCCgcctcccccacccccgcccccgaACAACCAGATGCCTATGGGTTCCCCACAAGTACGACCTTCCTCTTCCGGGCCTCAGTTCAACACCGCATCCAACAGCACGCCTCCCCAGCAGCCACTACAGCAGCCTCCCACTGTTGGAATGGCAGCAGGCTCACCAGCAAACTGTGTGGCCCGGTCACCACAAACTCCAAACCAGGCCCAGACACAACCACCAAGGCCTGGGAATGGTATTTTGATGAACCCAGGGTCTGGAGTAGTACCAGGCACGGGTTCTGGAGCAGTGGCAGCAGCTGCAGGCCAAGGGGGAATCGTCCCAGTATCAGTCCCAGTCCCAGTTCCATCATCCACTCCAGACTTGTCTCCAGCTGAGCAGTTGAAGCAGATGGCTGCTCAGCAGCAGCAAAGGGCAAAACTCATCCAGCAGACGCAAGCACCCAACTGGTCCCCTGCTGGCCCTCCAACCAGCCCATATGGGGGACCCTTCAACCCTGACAAACCAAATAGCCCAATGGTGTATCCACAAGCCTTTAACTCCCCAAACCCTATGGTGCCTTCAATGGCAAGCAACCCTCAGAAGGCCACTATGAATAACTACCTCCCTCAAAACCACATGAACATGATCAACCAACAGCCAAACAGCATGGGCCAAAACACTATTAACAAGCAACAGGCCGCTATGCTGTCCTACAGCAACACTAAGCCCCTAACCCATTTCAGCGCAGTTGAGCACATGGGTCAGAGGATGACCCCTCCGATGGCCAACCCCAATAAGAACCCCATGATGCCCTACATGCAGCAGCAGGCAgcgcagcagcaacagcagcagcagcaacaggtGCCGCCACAGAGCCAAGCGCAGATATCTGCTCAGGCCCCTCACCTGAGTGAagaacaaaaatgcatacttttcATGAAACAGAAAGCACGGAATCAGGGTATGCCTTACAGTGCAATGCAACCTCACAGCCAGcagcagcagagatATTGCTGTCTCTGGTTAGGGAAGCTCTGCCAGCACTCGCCCGCACGTGTCGAGGCTTGA

Function

GO: NA

KEGG:

id description
K06061 MAML; mastermind

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114761 lncRNA upstream 121886 14800091 ~ 14800376 (+) True G92005
TU114661 lncRNA upstream 383158 14518232 ~ 14539104 (+) True G91931
TU114570 lncRNA upstream 877734 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 1008505 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 1091449 13826524 ~ 13830813 (+) False AMCG00017615
TU114777 lncRNA downstream 11788 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 130702 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 134542 15066137 ~ 15067818 (+) True G92039
TU114822 lncRNA downstream 156537 15088132 ~ 15090475 (+) False AMCG00017651
TU114826 lncRNA downstream 161670 15093265 ~ 15106835 (+) True AMCG00017652
AMCG00017640 mRNA upstream 97048 14824534 ~ 14825214 (+) True AMCG00017640
AMCG00017636 mRNA upstream 157435 14748681 ~ 14764827 (+) True AMCG00017636
AMCG00017637 mRNA upstream 176033 14725976 ~ 14746229 (+) True AMCG00017637
AMCG00017628 mRNA upstream 448902 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017621 mRNA upstream 770483 14135600 ~ 14151779 (+) True AMCG00017621
AMCG00017649 mRNA downstream 48969 14980564 ~ 14996066 (+) True AMCG00017649
AMCG00017642 mRNA downstream 90136 15021731 ~ 15033505 (+) True AMCG00017642
AMCG00017644 mRNA downstream 105710 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017643 mRNA downstream 121771 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017651 mRNA downstream 156552 15088147 ~ 15090829 (+) True AMCG00017651
TU114568 other upstream 883199 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3041763 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5338982 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 6168481 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 6232856 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 145730 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 181015 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 935436 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1203430 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2669940 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile