RNA id: AMCG00017642


Basic Information

Item Value
RNA id AMCG00017642
length 2044
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00017642
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15021731 ~ 15033505 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAGAGGTGCACAGCAAAGTGTGTGAGAAACACGGAGGGCATTTCTTCAGTATTACAACACACCGTCCTCCTTGGTAGGGCTGTTCACTTGCCGTTCCCAGGCTTTCAGACACCATGGACAGTGATGACGAGCACATGGAAGAAACCGTTGAAGGCCCGCTGGATGAAGATGACCAACCGCATGGCTTCTGTACCATCACCTACTCCTCGAGTGACCGTTTCGAGGGACACTTTGTTCATGGGGAGAAGAATGGCCGAGGCAAGTTCTACTTCTTTGACGGAAGCACGCTGGAGGGCTACTATGTAGACGATGCACTCCAGGGCCAGGGTGTGTACACCTATGAGGATGGGGGCGTTCTTCACGGCACCTACATGGACGGGGAGCTGAATGGCCCAGCGCATGAGTATGACGCTGATGGACGCCTCATCTTCAAGGGCCAGTACAAAGACAACAACCGCTGGGGGGTGTGCTGGATCTACTATCCTGATGGGGGCAGTGTGGTGGGGGAGGTGAACGAGGATGGAGAGATGACGGGCAACAAGGTTGCTTACGTTTACACAGATGGCAGAACCGCGCTGTATGGCAAGTTCATTGAGGGGGAGATCATAGAGGCTCGTCTGGCCACGCTCTTGTCTGAAGAAAATGGACAGCCCCACTTTGAGTTGCAGCCTGGCAgtCCAGTTTTCACTTATGACAAGTCCACCTCCTCCTGCATTGCTGTCAACGGCCTGCTGCCTGACCCCTATGAAACGCAGAGggTGTATGTTGCAGATTCTCGCATTAAAGGGGCTGGGGAAGGCTTGTTTGCTAAAATAGAAGCTGAACCCAACACTGTCATGGCGTTTTATAATGGAGTGCGCATTACACACCAAGAGGTAGACAGCAGAGACTGGTCTCTCAATGGGAACACTATCTCTCTCGATGAAGACACAGTGATAGATATCCCTGAGCCATTCAGCAACATAAAGAAGTACTGTGCATCACTGGGGCACAAAGCAAACCACTCCTTCACTCCCAACTGCAAATATGACCCGTATGTTCACCCCCGTTTCGGGGCCATCAAATGCATCCGCACTATCCGGGCTGTGGAGAGGGACGAGGAGCTCACGGTTGCCTACGGATATGATCACACCCCCTCAGGAAAGAGCGGGCCCGAGGCTCCCGACTGGTACAAGCAGGAGCTTCAGGCTTTCCAAGCCAAGAAGCCACCGCAGTGAAGAGCTTCCGGCAGCACTGCATCAGGGACTAACCACCAAGACAACCcaacaaacaacacagcaacaacCAGGAACTATGCACTACAGTTGTGTAGAAAACCGCAGAACCAGGGAATCTAACTGGCCAgaacttttgtgtctatttagCTAACATTTAGTATAGAGACCAGaattcatttaatacatttattcacCACACAATAGCATTAGCTGgacttctccttctctctccatgcATGCATAGTACATTCACAATAATATTGTACAGTGACCATTGTTGACTGCAGTGTTCTGCTAACATGAACTGCTATCATTTGAAGATTGCTTAATCCGAGTCCCTTTTTTCTAACTCTCTGATTACTTAGaaaagtttaaataatgcaGCATTGTTCTttttactatttactatatattttcaagATTCCAACCAAACCCATGTGTTGAAATAGTGTATCAAAAAGTATCTGCAACTGGTGTACACAGTACATCTAATTTTAGTAGTCAATCAGAGAGCAAATTTGGTCTTCAATGTCCAATTAAAATGGTTGTCCACAATTTGACATGTTAAACGGAATGCTCTAGCAGGGCATGCCAGGTGAATGgcttaaatattttctgtatttattgcttttgaagtaatgcatcattttgtatatttcacaAATATGTAATAGGCTAATTAGTTTCACCTATTCAAAGCAGATTTAACCTAATCTCAGTTCCTCtaaaagtaagaaaataatgttggATCCCTTTATAGTCAAGCTAATGAATCTAAAATAGATGGGCAGACGAGTGTAATGGGGTGGGGGTGTAAACGTTTG

Function

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0018027 peptidyl-lysine dimethylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11431 SETD7; [histone H3]-lysine4 N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114761 lncRNA upstream 221355 14800091 ~ 14800376 (+) True G92005
TU114661 lncRNA upstream 482627 14518232 ~ 14539104 (+) True G91931
TU114570 lncRNA upstream 977203 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 1107974 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 1190918 13826524 ~ 13830813 (+) False AMCG00017615
TU114805 lncRNA downstream 28792 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 32632 15066137 ~ 15067818 (+) True G92039
TU114822 lncRNA downstream 54627 15088132 ~ 15090475 (+) False AMCG00017651
TU114826 lncRNA downstream 59760 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA downstream 59760 15093265 ~ 15106835 (+) False AMCG00017652
AMCG00017649 mRNA upstream 25665 14980564 ~ 14996066 (+) True AMCG00017649
AMCG00017641 mRNA upstream 90136 14922262 ~ 14931595 (+) True AMCG00017641
AMCG00017640 mRNA upstream 196517 14824534 ~ 14825214 (+) True AMCG00017640
AMCG00017636 mRNA upstream 256904 14748681 ~ 14764827 (+) True AMCG00017636
AMCG00017637 mRNA upstream 275502 14725976 ~ 14746229 (+) True AMCG00017637
AMCG00017644 mRNA downstream 3800 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017643 mRNA downstream 19861 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017651 mRNA downstream 54642 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017652 mRNA downstream 59686 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017650 mRNA downstream 75917 15109422 ~ 15116030 (+) True AMCG00017650
TU114568 other upstream 982668 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3141232 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5438451 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 6267950 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 6332325 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 43820 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 79105 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 833526 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1101520 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2568030 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_05467113_05471297.mRNA True 2002 mRNA 0.43 8 CI01000000 5467060 ~ 5472124 (+)