RNA id: AMCG00017643


Basic Information

Item Value
RNA id AMCG00017643
length 2346
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00017643
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15053366 ~ 15062281 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACCAAAGTCCTGCAGCTAGCTCACTCAACACACCAGCAAAATGGCATCAGTCAGTGGAGTGGAACTGGAACATTCCCCTCGAGGTTTAGAGCATGAGTACCTAACCCTCTTCAATGATAAGTCTGTACAGTTCATTGCAGAATTGGTCTCCACCTTTGAAGAAGACGCTGACAAGATCCTTAAACAGAGGACAGCCAGGAAAGTGCAACTGGATCTAACAGGAGATCTCCCCAGGTTCTCCAGCCTCACTGCTCACATCCGCAATGATCCCACATGGAGAGTTCTTCCTGTGccagagagactgagagacagacgCGTGGACATCGGGGACCTGGCGCCATGCAGCACGGAGCGCTTCACACAGGCCTTGAGGTCAACAGCTCAGGGGATCCAGGTTGATTTTGATGATGGAAACTGTCCTACCTTCTACAATCagattaaaggcatttttaatgtttgccaGGCAGTTCGTAATCAATTCCGCGATGTTCCACCAATTTCCAAGGCCCCAGTACTGATGCTCAGACCTCGAGCCTGGAACATGGTGGAGCACAACCTGCTGGTCAACGGCAAAGAGGTTCCCGGCCCCTTGTTTGATTTTGGATTATTAATGTTCCATAATGGAAAGCtgctgtttgaaaacaaaagtggGCCGTTTTTCTATCTATCCAAGATTGAAAGCCATCTTGAAGCAAGACTGTGGAACAACATATTCATTTGGACTGAACAAAAGCTGGGTTTGCCAGTGGGCAGTATaaaggccactgtgctcatagAGAACATCCTGGCCTCCTTTGAGATGGAGGAGATATTGTATGAGCTGCAGGAGCACTCCGCCGGCCTCAACTGCGGCATCTGGGACTATTCCGCCTCCTTTGTCAACAAGTTTGGCCATCGACCATCTTTCCTGCTGCCAGACCGAAGCAAATATGTGAACATGGAGAAGCTGCTGAAGTTACTGGAAATCAAGGCTGGAGTGGATGGATTCATGGTCTATGACCTTGAGTTAATAGAACCAATGCAAAagCTGTTCCTGGagcacacacagggacagaacCAGCTGCATGTGCTCAGGGAGGATGTCTCTGTCACACCCACAAATCTGCTCACGATGCCCGCGGGTGGTGTGACCCTCAATGGACTGAAGTATAATATTGCTGTTGGAATCCTCTTTATAGAGGCATGGCTTACAGGAAGGGGGCATTTTTTCTACAAAGGTCAGGTGGAAGACTCGGCTACTGCAGAAATCTCCCGGTCTCAGGTCTGGCAGTGGATTCGTCATCAAGTGAAATTGGAGGACGACAACAGAACAGTCACCAAGCAACTGGTGAAGAGTCTGGCACAGGAAGTCCAGAGAGAGCTGAAGGAGGGTCTCAGCAGTGATGCTGAAGCTGAACACCGGCTACACACCGCCTCTGCAATGTTCCTGGAAGTTGTACAGAAGTATGAGTTTCCAGAGTTCATCACCACTTATTTAAACCTGGACCACACTTTTCTAAACGCCACAGCTCAGTACAACAGGCACAGTACATttgtaaaacacaaactgtaatgtttaaaataaaggctCCTTAAGAAATGTGAGAAGGATGCTCTCAACCCACCTCTAGAATAGATGATTAATTAAAGTGACTCAGTTTTTGACTATTTGCATTTTGCCTAAATGGAACTAAAGAAATGGCAGTGttctaaatgcaaaaatactaattaaaaaaaaaatgtaatgtatataaaaggTATTGACAAAGATGCGTGTTGCAGTTTTCTCCCAGTGATAGAATGTGTTGGATTAAGACCAATCAAAGgcaatcaaaatatataataaaaaaaggacacaAGATTCTCTGgaaatgcacaatttccttAAGAATTCTATGAGGAAAACATAAGTTTTGCAAATGTGCAACTGTGCCACCAAGTGGACTATCTACAGACTACTGGAGCTAGTTATACATGTGCCAAATGCATTTATCTGTTCAATTTGAGAAATATCTGTGTCAGGAAACCAAAGACTGGTTTTATTTGACCATGAATCCAGATTTGAAATCTGCGACTACTTGGCAATAGTGCCCTTCAAGTGCACTTTTGCCCTGAACATAAACGCACCCCGTCTTAAAATTGGTCAGAACCAGCAAAATGAAagaatttaaaagaaagaaaaaaggtataACAAGGATTACATTAACCATACTCCAGGTTAAGGTAATGGAATCTGTACTAATGTATCCTTACTACCATGTCTTGTAATTAACTTAAACATAAATCTGCTGAACCTTTTGATAAACAGCAGACAATGTTAGTCAATTGAAATTCATCCTGCacagttaaaatacaacaatacaca

Function

GO: NA

KEGG:

id description
K01638 aceB, glcB; malate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114777 lncRNA upstream 16985 14943383 ~ 15036381 (+) True G92016
TU114761 lncRNA upstream 252990 14800091 ~ 14800376 (+) True G92005
TU114661 lncRNA upstream 514262 14518232 ~ 14539104 (+) True G91931
TU114570 lncRNA upstream 1008838 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 1139609 13858217 ~ 13913757 (+) True G91740
TU114805 lncRNA downstream 16 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 3856 15066137 ~ 15067818 (+) True G92039
TU114822 lncRNA downstream 25851 15088132 ~ 15090475 (+) False AMCG00017651
TU114826 lncRNA downstream 30984 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA downstream 30984 15093265 ~ 15106835 (+) False AMCG00017652
AMCG00017644 mRNA upstream 10567 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017642 mRNA upstream 19861 15021731 ~ 15033505 (+) True AMCG00017642
AMCG00017649 mRNA upstream 57300 14980564 ~ 14996066 (+) True AMCG00017649
AMCG00017641 mRNA upstream 121771 14922262 ~ 14931595 (+) True AMCG00017641
AMCG00017640 mRNA upstream 228152 14824534 ~ 14825214 (+) True AMCG00017640
AMCG00017651 mRNA downstream 25866 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017652 mRNA downstream 30910 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017650 mRNA downstream 47141 15109422 ~ 15116030 (+) True AMCG00017650
AMCG00017653 mRNA downstream 69142 15131423 ~ 15156693 (+) True AMCG00017653
AMCG00017655 mRNA downstream 131421 15193702 ~ 15194164 (+) True AMCG00017655
TU114568 other upstream 1014303 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3172867 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5470086 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 6299585 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 6363960 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 15044 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 50329 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 804750 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1072744 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2539254 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile