RNA id: AMCG00017646


Basic Information

Item Value
RNA id AMCG00017646
length 1874
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00017646
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15003446 ~ 15012768 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCTGGGTTGAGCAAGTTTTTAAGCAATCACAATATATCAAGAGCATGGCTGAACAACCCGTCCTCCTGGCTGCGGTGACACTGCTTTCTGCCCTCCACCTGGGTTACCTGGCAGGGAGGGTAGGAAAAGCTAGGAAGAAGCATACAATTGTGCCGCCATCAGTCACTGGTCCCCCTGAGTTTGAGAGAACTTTCCGTGCACATCAAAACTGCGTCGAGTTTTATCCAGTTTTTCTTGTGGTGCTCTGGACGTCTGGCATCTTCTTCAGCGAAGtgctaGCTGCTGTCCTCGGCCTTATTTACATCTATTCTcgacaaatgtattttgatggCTATACAGTCTCTGTTAAAGACAGGATGCCGGGGTTTTCCTTGAGTATCGGGCTTGTATTTACACTCGCAGGACTGGGTGCAGCTGGAGTTCTCAATGGAATCCTTGATGAGTACTTTGATATCAACGTGAGAAAGATGATTTCTAAATGGTAGAAGAGCAGCTGAAGGCTACCTTAAAAAGGGATCTCTTTACTGTATGaagatattttaattggttgttttaatgttatccTTAAGATTAAGCACAGTTCTACTGTTGACCTTGGTGTGCCTAACTTGGAGTTTGTAATGACTGTCTTTACCATGTGATCATTTCAGGGGCTACAATAAGAGTTCACTGTATTCCATTCATCTAAGGTTTAGACGTTCTGCTTCCACAAGGCTCTGCACATTATGGTATCGCATTGTATGCATTACACAAATATGTatctattaaatatattctaATGAAATGTCCCACAAGAAGTGTGGAGCTAatagtattttatgtatgtttgtactCTCTAAGAAGCTCTTTTAATGTGTGCCTTTTGGAGCGCTCGGGGGAGTGGGGAACTCTGACCCTACACCTGCAACCCCTCTGCATTTCAAAAACCATTCTATAGTCTCTATACtcagtgttattattaagtGAATctgtaacaattaaaaaatctgCCAATAAAAGTTAACCAGTGATAAAATTACCAAGGAAACAAAGGAAAGAACATTCACAACCAAGAATGACAAATAATGAACAGGTCAGTCAGACTTCTGGTCTATAAAAAGCAATGCCAATGTTTAGAGCACAACAAGTTTTCAAactttttctgctttaaaatgtttgcttctcCAGCTTTCTCAGGCAGCTTAAGTGagttggtttgtgtttttcttgggGTCAGTGCTGGCttgagaagaaagtcaagtgtCAGGGGATTATAAATGACAACTCGCTTCTGGGTGAACTTGTATCCTTGATTCAGCCTGAAGTGAGGcactgctgctgtgctgtgttggttGCCGATTAGGttactgtttttaaagtattgccTACATGGAGAGTTTTCTAATGTTGAAGGCGTTTGTTTCAAAGGCTATACTAgagcataataaaacacaagcaAGTGAACAAACAAGTAAGGCTGTAATCGAGTATTAGGGTAAACAATGCTTGGAAGCACAGAAGAAATATCTCCAGCAGATGAAACCAGAGGGGAGACTTGATTGAGGTCTTTGAAGTGCACACATCAAAACACCTGATAGGTCACTAGGGATTGGAGTGCTTGTGATGTCTGTGATGAAACAGTATAGGATGTGATAACTAAGTGTATACCATGACACAATCCAAGGCCTTTAAAAACAGCTCCTGGAAGTTGGGTTTCAGTGCAATCAATCAGGACTCTATTCTACACTACCAGCTCTGTGGGTCCTATTAGCACAGTGCTGGATGAGAAATTGAGAGGGCTGCGTGGAGCCGGAGACTAACCTGCTGTTTTAAGTTGCTGTTTAATTGGCAGCAAATGGATAATAGTGGGAGTTATCTTTTCTTAAATGTCA

Function

GO:

id name namespace
GO:0006691 leukotriene metabolic process biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114785 lncRNA downstream 77486 14924393 ~ 14925960 (-) True G92024
TU114762 lncRNA downstream 203045 14800090 ~ 14800401 (-) True G92006
TU114757 lncRNA downstream 238627 14760081 ~ 14764819 (-) False AMCG00017638
TU114571 lncRNA downstream 958919 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 2347113 12656069 ~ 12656333 (-) True G91576
TU114818 lncRNA upstream 41695 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 42524 15055292 ~ 15056623 (-) True G92050
TU114820 lncRNA upstream 44175 15056943 ~ 15057146 (-) True G92051
TU114844 lncRNA upstream 131767 15144535 ~ 15144735 (-) True G92067
TU114846 lncRNA upstream 149550 15162318 ~ 15162712 (-) True G92069
AMCG00017638 mRNA downstream 238614 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017639 mRNA downstream 327371 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017632 mRNA downstream 345958 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017634 mRNA downstream 390851 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017635 mRNA downstream 402830 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017645 mRNA upstream 30902 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017647 mRNA upstream 50659 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017648 mRNA upstream 63055 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017660 mRNA upstream 200729 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017659 mRNA upstream 210734 15223502 ~ 15234769 (-) True AMCG00017659
TU114641 other downstream 523659 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4506342 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6247539 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6488491 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 7006851 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 854179 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1017634 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1017688 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2455837 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3450016 18462784 ~ 18463176 (-) True G92436

Expression Profile