RNA id: AMCG00017649


Basic Information

Item Value
RNA id AMCG00017649
length 1461
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00017649
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14980564 ~ 14996066 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAACCGGGGGCCCTTCTGAGATACTCACGGAGAGGGAGGAGGGCCAGTCGGGGCTTCAGAGCTGTAACCCCTCCTCTCAGTGCAAGACACAACtACATATGCATAAGCTTAACCTACTGGAGATGGCAATGAAAAAACCTAGTATCATGAGAGGCACAGCCAAAGTAATGGAGCAGAATGTAGTTGGCATCTCCCGGCAGGCTGGTGCTGTGCAACCAACACTACAAGGCCCAGGGACTGTGACGCCAGTGCCCAGCACCAACCCGGGGGCACCTGGTTACCTCGGCAACCAGCAGCAGGCAGCCATGATGAAGCAAATGTTACTGGAGCAGGAGAAGCAGAGAGTCCAGCTACACGTGATAGAGCAGCAAAAGCAGCAGCTTCTGAGGGAACAAaggcaacagcagcagcagatgctGGCGGAACAGGTAACGCGTGCTCCTCGGTGGACAGCcttaatgagagagagagagagagagagagacctgaaGAGGGTTCACGAGCACTTGAAGGAGCTGGAACTGGCAGCGAGGAACCAGGCTCTTCAGATCAGGAATGCCCATTTGCTTCAACAACAGCAAAGCCAAGGCATACTCCAGATGGCATCCATCCAGAACTCTGGCTCGATGCCAGCCGCGGCCGCCCAGTCCGAGATGAACATGGCGTACAGCAACACCCCCAGCAGCCAGCAGGGCATCTACAGCATGAATCCTGCAATGAACCAAATGTTGCAGCACCCAAACCAAAGCAGCATGAATATGTCCCACAACCCTTCACAGGGCCAGAGACAACCCAGTGCAGGACAAGGGGTTGGGATGGTTGGGGGTTATGGGCAAGGCATGTTGATCAACTCCGCCATGTCTCAGCAGCAAATGAAAGGACCACCTGTTGGCCAACCCATCCCCAAGGCCCAAGCACAGAGACTCCAGAGTATTATGGGAAATGCCGCCCAGGGGGCACAGGGCtggcagcaacagcagcagggACTGCAGGGCATGAGCGGGCGAACTAGTGGAGAAATGGTGGCCTTCAATAGTAATTCGGCATACGCCATGCAGCCTGGTCAGCCACGCATGACCAAGCAACACTTTCCTCAAGGAATGAACCAGCCTATTGTGGATCCCAGAGCCATGAACCCTGCAATGAGTGGGCAGATGATGCCCCATATGTCTGGCCAACCAAGGACCAACCAGCCCCGGCCCATGGTCATGGCTGGAATGACCCAGGGTGTTCCCAATATGACTCCTTTTAACCAAGGCCCTGGCCAGCAGATGGCAGGTGGTGGTGCCTCTTACGTGCAAGGCAGTCAACCACAGGGCTACCAGCGGACATCAAGTCAGGACTTGTCTTACAGTTATAGCAGCCAGCCGGCCAGCGGGGGCTCCTTTAATATACCCGACGGGGCTGACCTGGACTCAACGGATGGGTGGATGGACGAGTTCTTTCCGAGCCAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114761 lncRNA upstream 180188 14800091 ~ 14800376 (+) True G92005
TU114661 lncRNA upstream 441460 14518232 ~ 14539104 (+) True G91931
TU114570 lncRNA upstream 936036 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 1066807 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 1149751 13826524 ~ 13830813 (+) False AMCG00017615
TU114805 lncRNA downstream 66231 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 70071 15066137 ~ 15067818 (+) True G92039
TU114822 lncRNA downstream 92066 15088132 ~ 15090475 (+) False AMCG00017651
TU114826 lncRNA downstream 97199 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA downstream 97199 15093265 ~ 15106835 (+) False AMCG00017652
AMCG00017641 mRNA upstream 48969 14922262 ~ 14931595 (+) True AMCG00017641
AMCG00017640 mRNA upstream 155350 14824534 ~ 14825214 (+) True AMCG00017640
AMCG00017636 mRNA upstream 215737 14748681 ~ 14764827 (+) True AMCG00017636
AMCG00017637 mRNA upstream 234335 14725976 ~ 14746229 (+) True AMCG00017637
AMCG00017628 mRNA upstream 507204 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017642 mRNA downstream 25665 15021731 ~ 15033505 (+) True AMCG00017642
AMCG00017644 mRNA downstream 41239 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017643 mRNA downstream 57300 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017651 mRNA downstream 92081 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017652 mRNA downstream 97125 15093191 ~ 15102994 (+) False AMCG00017652
TU114568 other upstream 941501 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3100065 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5397284 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 6226783 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 6291158 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 81259 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 116544 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 870965 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1138959 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2605469 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile