RNA id: AMCG00017650


Basic Information

Item Value
RNA id AMCG00017650
length 4227
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00017650
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15109422 ~ 15116031 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAGCCCCTGTGCTTGCAGCAGAGACACTGGAGATAGCTGCAGCTTCGGTGAGGGAGACACCTGTACCCCCGCAGGAAGAGACACCACTTATAGCACTGGCATTACAGGCGACCGTAGTGTCTCCTAATGTAAAGGCAGATGAGTCTTTGGATGTAGCGGTGGTCTCAAGAGGGGAGCCTGAATTGACACCAGCAGAGGAAGCAACATTGGTTTCAGTGGATGATGAGGAAATCACAGCTGAAGAGTTGCCAGCAGTGGCTATAATAGAGGAAACAGAGGCTCCTTCCACAGTAGAGGAGGTTGATGATGCGGTAGCAAAGACAGAAACCATGGATGCAGTAGTGTCTCTACTTGGAGAAGCACAAGAGGAGTCAGTTAAAAACGGGGAAGACGCCGCCAATGCTTCAGAAGAGGAGGCAGCCCCCCCTGAAGTGAGCGATGTGGAAGTCAACCCATTTGAGGACACACTCACCACATCAACGGCAGAGCCAGCGGTAGTGCTTCTACAGGAGGCAGAAGTCACTGATGAAGAGGAGACACCTGCTGCTGTGGAACAAACAGACATAGTGACTGTAAATGAAGCAGTCCCAGCTGTAGAGGGTCCAACAGAAGCCCCAGGAGATGCACAAGGAGATGTATCAATAGTTAAGACACAAGAGGACACCATTGAAAATTCATTTGAGACATTAGAAGAGGCTCCAATGGGGGGTGTAGAGAAGAGTCCGGCAGAGGACACAGCACTCACTGTACAGGTGGCAGGAGTGAGTGCTGGCGAGGCCCAAGCAGTTGAAGCAGTGGAGGAGAAAGCAGATGCTACAGTTGACGACACAGCAGGGACCTCAGCAGAGGTGGAGACTGAGGCAATAGCACAACCTCCAGCAGAGGAAATAGAAGGAAACCCTGAAGAGATCTCAACAGCGGTTTTGGTGGTGGAAACTGAGGCTGTGCCAGCAGTGGAGGCGGCTGTCCCTCCTGTAGTAGAGACAGAAGTGGAGTCTTTGAAGAACACAATAGCCCTCACTGGACAGGAAACCAAGGTCACTGCAAACAGTGGTGACACAGTGATGATCCCAGAGGCAGAGAGCACACCCCCTCCAGCAGAGGATATAACAGAGCCCCCCCTGAAGGAGAAAGTAGAGGTTACATCCATTCTCAGGGATGAGACAGCTGGAACTGCAGGAGAGGAGGCAGCGATGTTGCCAGCAGAGGAGacaggtgaaaaaaaaatgaaagcacaggTGGAGACAGTGGAGAAGGCATCGATGCCAGTGGTGGAAGCAGTGGAGAAAGAAGTAGAGTCTGTGAAGAACGCAATAGCCCTTACTGTACAGGAAGCTGAGCTCACTGCAAGGGCAGTGGACACTCCTGAAACAGTGGTGAccccagagacagagagcacACCCCCTCTAGCAGAGGATGTAACAGCGGCCCCCCTGATGGAGAACATGGAGGTCGAGACAGAGGTCAAGACAGTGGAGAAGGCATCGATGCCAGTGGAGGAGGCAGTGGAGACAGCTGTGGTtctggtttcacagacatggAAGACAGAAGTGACAGAAGAAAACTCTCAGGAAATCAAAGAGTCAGTGGAGCAGGATAAAAATACTGATGCTGAACCACTTGCTGAAAGcagTAAAGAGTAGCAGTTCTGTGCTTGTAAGAAATGGTTGAAGAACGAGACGAAAGAGATAGTGCCTTCCCTCTATTCCCCAGGCACACAACATTGTAGTTTATGTACGAGGTAATGTCTGCTTTATGAGTAGGTTTTATAAAGAGTGTCAATTCTATTAATTCCTTTTACCAATTCCTCACTCAGGAGATGCACAAATTACGCACAAACagctttattataatgttaGCAAAATACCTTTATATATCTGCAGAACTCTGTAGTAAGCTTAAGAGCCAGAACATGCTTATCAGATCACAGTAGGGTAGAATTTTGCCaggttattttaataacatttactAGGTTTTAGGCTTTACAGTGCAGTTATTACTTAGAAATCAatttaaagcaatattttaatgtatagagTTTAGTTTAAAACATGCTCACTTACCTCATAATGTACAGCCCCATGCCTGCTTACATTAACTTGGATTGTATGGATCTTAATCATCAAGtggtttacaaatatataaatgtacattattaaaaataaggaaCATTCACCGTAtttaacacacagagagacaagtTTATCAAACACAACATTCTCACATTCTGATATTTAATGAGGCTGCTTTTAGAAGCTTGTGGAACAAGTTCCTTATGAGGCAGACATTACCTTTCTTGATTAGGTTGTCACGTATTTGCAAGCTAACATAGagccatgttttatttctgcaaatCTATCCGATAGGGTCCTCCACATAGAGTAATTGTGTATTTGAGAACCCAATATGAAATGTATCCTCTTTCTTGTTCTGCAGTTTAAAATCCTGAAATATAACAATGCATTCACAATTAAGGGAGACTCGTTTACCaatttaaattaactatattCTTTCAGTAGGATTTTAAGATATTGTAAACACATTATGATCTTTTAAAACTGCACAATGTTCATTCCTACTATAATATCTAGTATAACAATACTGTGGCATTCCCTCAGTGTGTCAaactattaaatgttttcagtcaAGAGGAATCATTGGTCCTGTACCATGTTATTCTTAAATAGTTGCAAGTTCCATTTGTCTATGGGAAACAATCTAGTCCATGTAATCTAGTAATCTAGTATAATATAGATACACTTTAAAATTGAAGGGCCCAAAAACTCGATGTAAAGTGTTATTACAGATCTGTAGGTTTGTAAAACAATGTTACTCACTACATCAATACCTACTGCCACCAGAATACTGTGTaatgaatcaatacaaatgcaaaatgtgatcAACTGCTTTCCATGAACACTACATGGGCACTAGAGAAtgttatgaaatatgttttagttaataatGAATGGTTATGAcaatttcaaatgtttagtATATGATGTtaggatgtaaaaaaaaacactagtagtatcagaaaaacaaatctttctgTCCTTGTGTTTGACTTAGGTTTCAAGAATGACCCTTCCTTTTAGAAATGGAGGAAaggaagtgaaaaaatatactaTAATTGATGGATTAGGTTACTCTTTAGTACTATTGGCCTATTACTGTACTCAGAGTTCCTTGTAAACATTACTGGAATCTATGGAAGTTTAATAGCGTCACAAGAAAAAAACTTTACTGCGTTAATACAAgatcattttcagatatttcaCAATAATGATTGTGTTACAGTTACAGATAATTGCCCATTTTTGTTAACAGGCAAATAgcataatttcaattaaatcaacTATACTCATATTATTTTAGTACCGTGCTGCTGTTGTGTCCGACAGGGGCTTGTCACTGCCACCCTGCTGCCCCTGGGCCTAGATCCCCGTTCCTATGGCAGGGGTTCACCACATCTGCTGGGCCCCTCTCACTGTCTCAGTTGCTGCCTCTAGCAGGGATTCATCCACTAGAACTGGAAGCAGAAGAGTTCtagtctctctttctcacttgACTCGGGGAAGGCCACCTGGCTGCGTCCCAGTGTTCGTAGGAGTTCCCCTCATCGGTTTGTTCAGGTCCTTGGTATGTCCTGTCGAACACATACCTCCACCACCCTATCTCTTCCTCAGGGCAATCTCACACGACAGCATCTCCCAAAAAAATCCAGATTGctacagtataaataaaaatacacagttcACTGTATGGAAAATAGTCAACTACTGTACATACACTTTCAATCCCTTGCTATTTGTACTAAAATCTTACACCCTGATCTTTGAGTAAGACCAGTTGCAGGGGTTTTCTAGTTCAGGTGTAATGGTTATGAATAAAACACCAGACAGTACAGATCCATGGACATTTTGACATAAGCATCAATGTTGTGACAAAGTTATCTTGTATTATCACAATAATTATTGGgaaataaagcaatattatcttgtattaatgcaataattattgttaaataacacaatatctaattttaacacatttattttctatgtggCACTAATAGGCTAATATAATATACCTGTAGTTATAGTATACAAGAAAATGTGATGCAGAAATGTGGACTGTTATTTCTCTATACAACAGTTGAAACTGTAAACTGTGAATATAGACATGAttgtttttgaataataaaGAGTGTCTCAAAATAA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114826 lncRNA upstream 2587 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA upstream 2587 15093265 ~ 15106835 (+) False AMCG00017652
TU114822 lncRNA upstream 18947 15088132 ~ 15090475 (+) False AMCG00017651
TU114805 lncRNA upstream 24024 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA upstream 41604 15066137 ~ 15067818 (+) True G92039
TU114831 lncRNA downstream 46300 15162330 ~ 15162692 (+) True G92059
TU114878 lncRNA downstream 411531 15527561 ~ 15527878 (+) True G92095
TU114917 lncRNA downstream 1050612 16166642 ~ 16182070 (+) True G92133
TU114933 lncRNA downstream 1199024 16315054 ~ 16315523 (+) True G92145
TU114935 lncRNA downstream 1314422 16430452 ~ 16430712 (+) True G92147
AMCG00017652 mRNA upstream 6428 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017651 mRNA upstream 18593 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017643 mRNA upstream 47141 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017644 mRNA upstream 66623 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017642 mRNA upstream 75917 15021731 ~ 15033505 (+) True AMCG00017642
AMCG00017653 mRNA downstream 15393 15131423 ~ 15156693 (+) True AMCG00017653
AMCG00017655 mRNA downstream 77672 15193702 ~ 15194164 (+) True AMCG00017655
AMCG00017654 mRNA downstream 91579 15207609 ~ 15212259 (+) True AMCG00017654
AMCG00017657 mRNA downstream 483389 15599419 ~ 15605110 (+) True AMCG00017657
AMCG00017658 mRNA downstream 493953 15609983 ~ 15794447 (+) True AMCG00017658
TU114814 other upstream 25144 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 1070359 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3228923 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5526142 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 6355641 8751713 ~ 8753781 (+) False AMCG00017527
TU114906 other downstream 751001 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1018995 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2485505 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 3957208 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 4286056 19402086 ~ 19411990 (+) False AMCG00017710

Expression Profile