RNA id: AMCG00017651



Basic Information


Item Value
RNA id AMCG00017651
length 818
RNA type mRNA
GC content 0.37
exon number 4
gene id AMCG00017651
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15088132 ~ 15090829 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGCTTTCTAATCAAGAGCCGACTGTTTCTCTGTGGGACCGCGGTTATTGAAGTCTATTGAACATACAGACCCGCGGATATAATGCCTTTAAATAGGTTATTGTTGCGGACGGCCTCAGTTAGTAAGACTGTAACCCGTTCTGCATTCACTGCAAGCAAACGTGATCGCAGCAGCCCCGACTGGCTGCGTGTGGGGCTGGCATTTGGAGGTACAGCAGCTGTCTGGGCACTGTTGTTCAAGCAACACAGTGAAGATGTGCACGAGtataaaaagagaaatggaCTGGAATGATGGACTGAAGCTAATATATTCCAATGGTTCATATTTCAACGGTGAAAAACAGGCAAGGACTGTGCTGTTTGATGTGAAGATTTGAGGAATATGCTATCGACATGTTGCTATCGGTGTTTCTGCAAATGTTGTCATGTAATTGAAGtaaagttatatttatattaaacatttactgggtgtctttgctttttctagtcttacacagaaaatgcaatagtattttaaattctattgCTTTGATTTTTTCAGATTACGATCTATTTGgtaattatgaaaaaaaggGTACTTTACTCCTTCACGGTATATATCAGTTTATGTACATGAATTATTAACTGTTTTTCTGCTGTTGAGTGTTaatttggtttcagttttttcacttttaaatcaaGAATTGAATGGTATTTGAGTTATGGGTTAAAATATTATGGTTGTACTTACAATGAATTTTTAATGGGGAGATTGAACATGTTTGTGCTCTGTAACTGTGATATAATGTTCCTATCATCATGAAAACAGTATCACAATG

Function


GO: NA

KEGG:

id description
K03967 NDUFC1; NADH dehydrogenase (ubiquinone) 1 subunit C1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114805 lncRNA upstream 2749 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA upstream 20329 15066137 ~ 15067818 (+) True G92039
TU114777 lncRNA upstream 51766 14943383 ~ 15036381 (+) True G92016
TU114761 lncRNA upstream 287771 14800091 ~ 14800376 (+) True G92005
TU114661 lncRNA upstream 549043 14518232 ~ 14539104 (+) True G91931
TU114826 lncRNA downstream 2436 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA downstream 2436 15093265 ~ 15106835 (+) False AMCG00017652
TU114831 lncRNA downstream 71501 15162330 ~ 15162692 (+) True G92059
TU114878 lncRNA downstream 436732 15527561 ~ 15527878 (+) True G92095
TU114917 lncRNA downstream 1075813 16166642 ~ 16182070 (+) True G92133
AMCG00017643 mRNA upstream 25866 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017644 mRNA upstream 45348 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017642 mRNA upstream 54642 15021731 ~ 15033505 (+) True AMCG00017642
AMCG00017649 mRNA upstream 92081 14980564 ~ 14996066 (+) True AMCG00017649
AMCG00017641 mRNA upstream 156552 14922262 ~ 14931595 (+) True AMCG00017641
AMCG00017652 mRNA downstream 2362 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017650 mRNA downstream 18593 15109422 ~ 15116030 (+) True AMCG00017650
AMCG00017653 mRNA downstream 40594 15131423 ~ 15156693 (+) True AMCG00017653
AMCG00017655 mRNA downstream 102873 15193702 ~ 15194164 (+) True AMCG00017655
AMCG00017654 mRNA downstream 116780 15207609 ~ 15212259 (+) True AMCG00017654
TU114814 other upstream 3869 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 1049084 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3207648 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5504867 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 6334366 8751713 ~ 8753781 (+) False AMCG00017527
TU114828 other downstream 21781 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 776202 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1044196 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2510706 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 3982409 19073238 ~ 19073662 (+) True G92538

Expression Profile