RNA id: AMCG00017653


Basic Information

Item Value
RNA id AMCG00017653
length 756
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00017653
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15131423 ~ 15156693 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTCCCTCACAGCTGGCTCCAGGGGTCTGGGAGAGGCGTCTCCAGCGGGGGTCTTGCGCTTCTGCTTCACCTCGGTCACCTGCTCCTCTGTGACCATGGCAGCCAGGAACTCCAGCTTGAAGTTCATCTGGGTGTTGGCACGGCAGAAGGACAGCACACCGATGCCGTCAAAGGTGAAGTGGATGTTGCGCTGGGTGGCCCTGCGACTGAACTGCAGCTGCACGATCTCGCGCACGCAGCGCTCCACTGTGTTGCGCTCGAATGGGGTCCCCCAGCCACAGAAGGCGACGCAGGTGGTTCGAGTGAcagtggagagggagaggcgcATTTCAACGCCAACCCTCTCCAGACTTTCAGGAAATGaCATCAAAGGAATTTGGACCAGCGTGTCAAAGTTCATTCAAGACAAACTGTCTCTCAAGATGGGGGTGTATGTGCGGGGGCTGGGGACCTTTGCGTGGTCTCAGACCTGGCGACCCATCTTCCAGATAGGCGTAAGGGCTGCAAGAAAGCATGGTCTGAAGCAGCGCAAAGTGCCTGTGGCAGGGTCGTGGCGACATATTTGCCAGTGCAGTCTCTTCGATAAAGTCACGATGCCCGATGGACACACATACTTCCCAGGCCAAAGCAACAATGCCTATGTGTTCCCAGGGGTGGCTCTGGGGATGACAGCCTGCGGCATGCACAACATCTCTGATCACTTCAGCTGTGGGACTTCTCATGTCGATCAATCTGATCAGCTGCTGGCCTGA

Function

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114826 lncRNA upstream 24588 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA upstream 24588 15093265 ~ 15106835 (+) False AMCG00017652
TU114822 lncRNA upstream 40948 15088132 ~ 15090475 (+) False AMCG00017651
TU114805 lncRNA upstream 46025 15062297 ~ 15085398 (+) True G92038
TU114831 lncRNA downstream 5637 15162330 ~ 15162692 (+) True G92059
TU114878 lncRNA downstream 370868 15527561 ~ 15527878 (+) True G92095
TU114917 lncRNA downstream 1009949 16166642 ~ 16182070 (+) True G92133
TU114933 lncRNA downstream 1158361 16315054 ~ 16315523 (+) True G92145
TU114935 lncRNA downstream 1273759 16430452 ~ 16430712 (+) True G92147
AMCG00017650 mRNA upstream 15393 15109422 ~ 15116030 (+) True AMCG00017650
AMCG00017652 mRNA upstream 28429 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017651 mRNA upstream 40594 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017643 mRNA upstream 69142 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017644 mRNA upstream 88624 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017655 mRNA downstream 37009 15193702 ~ 15194164 (+) True AMCG00017655
AMCG00017654 mRNA downstream 50916 15207609 ~ 15212259 (+) True AMCG00017654
AMCG00017657 mRNA downstream 442726 15599419 ~ 15605110 (+) True AMCG00017657
AMCG00017658 mRNA downstream 453290 15609983 ~ 15794447 (+) True AMCG00017658
AMCG00017656 mRNA downstream 672236 15828929 ~ 15835050 (+) True AMCG00017656
TU114828 other upstream 15392 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 47145 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 1092360 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3250924 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5548143 9519773 ~ 9583280 (+) True G91281
TU114906 other downstream 710338 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 978332 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2444842 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 3916545 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 4245393 19402086 ~ 19411990 (+) False AMCG00017710

Expression Profile