RNA id: AMCG00017654


Basic Information

Item Value
RNA id AMCG00017654
length 1500
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00017654
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15207609 ~ 15212259 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAACCTTTTCTCTTGCAGTGGAAGCTTCAGTGCACGGTAGCAATGTCCACTGCCCAGATAAGACTATCGAGGCGGCCGAAGCCCTGCTCCACATGGACTCTCCTACCAGCCTGAGGGGTGATCGCAGCCCAGTGGAGGTGTTTGTGCCCCCATGTGTAACGACGCCCGAGTTCATCCACGCTGCGATGAGGCCAGATGTCATCACTGAGACTGTGGTAGAGGTGTCCACTGAGGAGAACGAGCCCATGGAAGTCTGTACCATCATAGAAACTCCAGAGAATGAGCCCaccaaaaagaagaaagGTAACACCACCTATTTATGGGAATTCCTGTTGGACCTCCTCCAGGATAAGAATACCTGTCCCAGGTATATCAAGTGGACTCAGAGGGAGAAAGGTATCTTCAAGTTGGTGGATTCAAAAGCTGTATCCAAACTGTggggaaaacacaaaaacaaacccgaCATGAACTATGAGACAATGGGAAGGGCACTGAGATATTATTACCAAAGAGGTATCTTGGCAAAAGTTGAAGGGCAACGCCTTGTCTATCAGTTCAAAGAAATGCCCAAAAACATTGTTGTAATAGATGATGACAAATGTGATCCCAGTGGCGAGGAGATACTGAGCGCAGCAGCAGACAAGTCTTATGAGCGTGTCCCCCCATCCTCCGAGAACCTGCTGAGCTCAGCTGAGCTGTCGAAGACCCCTGGTATTCTGCGGGGCGGGCCAAGGACGCTGGTGCACCAGAGCCATGTCAAGGGCGGCAAAACCACGCACTCCATGTCTATGCCCCGGATAGTGAGCGTAACGTCAGCAGTGCAGCACCAAGACTCCTCGCATTCACAGCAGCAGACGCACACCACTATAATTCCCACAGCCTCGGGGCCCAGGACAGTGCGTGTGGCCATGCAGGTCCCTGTAGTGATGACAACGTCGCTTGGGCAGAAAATCTCCACCATGGCAGTCCAGTCTGCAGGCTCTCAAGTCCTCACCAACAGCAGCCCTACCACAGGCACAGCCCCCAAGGTGGTCATCCAGACCATCCCCACGATGATGCCGGCCACTGCCGAGAATGGAGACAAGATCACTGTGCAGCTTGCCAAAATCATTACCATCCCAGCCAACCAGCTCGCACAGTGCCAGCTGCACACCAAGTCAGGCCTGGCTGGGACTTCCAGCATCAATCTCATGGGAGCCCCGATGACTGTCAGAGCACTTACTCCTGTGTCGGTAGCACCAGGAACCCCTATCATGAGACTGGCCATGCCAGCACAGCACCACCACCAGCAAACCAGCCAGGCTGCCAGCCATACCCCAGCACGAGTCATCAGTGCCATCATCAAGAGGCCGGAGGTCAAGCAGGAGTGTGCAGCGCAAACTGCAATAAAGACAGATAAACAGTCACAACATGAAGTGGCAGAGAGAATGGCAGAGAGCCCCAATTCAGTGACTGTTACCATCCCTGTCACAGTCAAATCAGAAGGGACTGAATGCTGA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09428 ELF1_2_4; E74-like factor 1/2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114831 lncRNA upstream 44917 15162330 ~ 15162692 (+) True G92059
TU114826 lncRNA upstream 100774 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA upstream 100774 15093265 ~ 15106835 (+) False AMCG00017652
TU114822 lncRNA upstream 117134 15088132 ~ 15090475 (+) False AMCG00017651
TU114807 lncRNA upstream 139791 15066137 ~ 15067818 (+) True G92039
TU114878 lncRNA downstream 315302 15527561 ~ 15527878 (+) True G92095
TU114917 lncRNA downstream 954383 16166642 ~ 16182070 (+) True G92133
TU114933 lncRNA downstream 1102795 16315054 ~ 16315523 (+) True G92145
TU114935 lncRNA downstream 1218193 16430452 ~ 16430712 (+) True G92147
TU114939 lncRNA downstream 1391392 16603651 ~ 16603919 (+) True G92151
AMCG00017655 mRNA upstream 13445 15193702 ~ 15194164 (+) True AMCG00017655
AMCG00017653 mRNA upstream 50916 15131423 ~ 15156693 (+) True AMCG00017653
AMCG00017650 mRNA upstream 91579 15109422 ~ 15116030 (+) True AMCG00017650
AMCG00017652 mRNA upstream 104615 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017651 mRNA upstream 116780 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017657 mRNA downstream 387160 15599419 ~ 15605110 (+) True AMCG00017657
AMCG00017658 mRNA downstream 397724 15609983 ~ 15794447 (+) True AMCG00017658
AMCG00017656 mRNA downstream 616670 15828929 ~ 15835050 (+) True AMCG00017656
AMCG00017662 mRNA downstream 2183472 17395731 ~ 17428335 (+) True AMCG00017662
AMCG00017666 mRNA downstream 2296992 17509251 ~ 17511291 (+) True AMCG00017666
TU114828 other upstream 91578 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 123331 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 1168546 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3327110 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5624329 9519773 ~ 9583280 (+) True G91281
TU114906 other downstream 654772 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 922766 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2389276 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 3860979 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 4189827 19402086 ~ 19411990 (+) False AMCG00017710

Expression Profile