RNA id: AMCG00017661


Basic Information

Item Value
RNA id AMCG00017661
length 4333
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00017661
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 16785668 ~ 16797841 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaagatatagtGCAATCTGTGGGTTAGAAATAAGGTTTGCAAAACATCCATATATCCACTGAggatattttattgtttgtttccttttatttgacTTATAAGGGATATGCGCTGTTGCTGCATTACAGTGTTTTCTCTGAAGCCAAAGCTCAGACAATTCAGTATACCAAAATAACTGTTGAGGATCAAGCGACTGTATCTGTCAGCAAAGTTGAGCAGAGATGTTTCGGGTGTTATACGTGTAAAGGGGAAATGAACTGATGCGGGAAGCTTTACAGATTTCGCCTTTTTTCCGGACAGAGGTGATGGGAAATTCTCAGCCCATACAGAAGGAATAAAAATCCAAGTGCACTTCTAATTTGGAGATGATTGTGTTATTTCTCCTGCTCTGCATCGTGGATGGAGTGGTTTCCCAGATCCGCTATTCTGTGCCAGAGGAGCAGGACCATGGCACGTTTGTGGGGAATATTGCCGAGGATTTGGGCTTGGACATCACCAAACTTTCCTCTCGCAGGTTTCAGACTGTGCCCAGCTCCAGGACTCCGTACCTCGAAGTGAATTTGGAGAACGGGGTGCTTTTTGTGAATGAGAAAATCGACAGGGAACAGATCTGCAAACAGAGTGCGACCTGCCTTCTACACCTGGAGGTATTTTTAGAAAACCCTTTGGAGCTTTTCCGTGTGGAAATCGAAATAGTGGATATCAATGACAACCCCCCCAGCTTCCCCGAACCTGACATTACTGTTGAAATTTCGGAAAGTGCCACTCCTGGAACCCGCTTCCCACTGGAGAGCGCATTCGACCCCGATGTGGGCACCAATGCGCTCCGCACCTATGAAATCACCACCAACAGCTATTTTTACCTCGATGTGCAAACACAAGGTGATGGGAACAAGTTTGCAGAATTAGTATTGGAAAAGCCACTGGACAGGGAGCAGCAGGCAGTGCACAGGTACGTACTAACAGCAGTGGATGGGGGTCTGCCCCAGAGGACTGGCACGGCGCTGCTGGTGGTTAAAGTGCTAGACTCCAATGATAATGTGCCAGTCTTTGATCAGTCGGTGTATACGGTCAGCTTACCCGAAAACTCGCCAGTGGGCACTCTGGTCATTCAGTTAAATGCTACCGACATGGACGAGGGACAGAATGGGGAAATTGTCTATTCTTTTAGCAATCACATTTCTCCAAGAGTAAAGGATCTGTTTAATATCGACCCCAGAACGGGCAGGATTGAAGTGAGTGGGGAGGTCGACTTTGAGGAGAGCAGTATGTATCAAATCTACGTGCAGGCGAAAGATCTGGGACCTAACGCTGTGCCAGCCCACTGTAAAGTCCTGGTCAAGGTGCTGGATGTGAATGATAATGCCCCGGACATTAGTTTCAGCACAGTGACCGAGTCGGTGAGCGAGAAGGCTGCCCCTGGCACCGTGATCGCCCTGCTCAGCGTCACCGACAAGGACTCCGGGGAAAACGGGCAGATCCACTGCGAGATCCTGGGAGACGTCCCTTTCAAGCTCAAGTCTTCTTTTCGGAACTATTACACCATTGTTACGGATGGACCTCTGGACAGGGAAAATGCCGATTCATACACCATCACAGTGGTGGCAAAAGACAAGGGTTCCCCGTCCCAGACAGCGAGCAAGTCCATTAAAGTGCAGGTGTCAGATGAAAATGACAACTCTCCCAGATTTACGCAGCCCATTTATGATGTCTATGTGACTGAAAATAATGTACCCGGGGCTTATATTTATGCAGTAAGCGCCGTGGATCCCGACATCGGGCAAAATGCTTATATTTCTTACTCCATATTGGAGTGCGATATTCAGGGCATGTCAGTTTTTACCTATGTGTCAATCAATTCTGAAAACGGCTACCTTTACGCGCTGAGATCATTTGATTATGAGCAATTGAAAGACTTCAGCTTCATGGTTCAGGCGAAAGACTCCGGCAGCCCTGAGTTATCCACCAATGCGACAGTTAATGTGATCATAGTGGATCAAAATGACAATGCGCCTTCAGTCATTGCCCCGCTTGGCAAAAACGGCACAGCCAAAGAACATCTGCCCAGATCTGCAGAACCTGGCTATTTGGTGACCCGGATAGTGGCCATGGATGCAGATGATGGAGAAAACGCTCGTCTGTCTTATAGTATATTAAGGGGAAATGAAATGGGCATGTTTCGGATGGACTGGAGGACTGGTGAGCTGAGGACTGCCAGAAGGGTCCCCAGCAAAAGAGACCCGCATCACCCTTACGACTTGTTGATCGAGGTGAGGGACCACGGACAGCCACCTCTTTCCTCCACAGCCAGCGTGGTGGTTCTCATAGTGGACAGTATTGTGGAAGGCCACAGTGGGGATCGTGGGTCCCCCAAAACTAAAGAGACGTCCCTCGATTTGACTCTGATACTCATTATCGCCCTGGGCTCCGTGTCTTTTATCTTCCTCCTGGCGATGATAGTACTGGCCATCCGATGTCAAAAGGACAaaaaattgaacatttacaCGTGTCTGGCCAGTGACTGCTGCCTCTGCTGCAGTTCTTGCTGTAGCAGGCAGGCAAGAGCCAGGAAGAAAAAGCTTAGCAAGTCAGATATCATGCTGGTGCAGAGCTCTAATGTCACCAACACTGCCCAGGTCCCAGTAGAGGAATCCGGGAGCTTTGGTTCCCATCATCAAAACCAGAACTATTGCTACCAGGTATGTCTCACACCGGAATCGGCCAAAACTGATCTCATGTTCCTAAAGCCCTGTAGTCCTGCTAGGAGCACAGACACTGACCACAATCCCTGTGGAGCCATAGTGACAGGTTATACAGACCAGCAGCCTGACATCATATCTAACGGCAGCATATTATCAAACGAGACAAAACACCAGCGAGCTGAACTCAGTTACCTTGTTGATAGACCGCGGCGTGTTAACAGTTCTGCTTTCCAGGAAGCAGATATAGTGAGTTCTAAAGACAGTGGACATGGTGATAGTGAACAAGGAGACAGTGACCATGATGCCACCAATCGAGGTCATGCATCTGgcGCTGATCTTTTTTCAAATTGCACAGAAGAGTGCAAAGCCCTAGGGCACTCAGATCGATGCTGGATGCCCTCCTTTGTGCCATCCGATGGCCGCCAGGCTGCAGATTATCGTAGCAATCTGCATGTTCCAGGAATGGACTCTGTGCCAGACACTGAGGTATTTGAAACTCAAGAGCAAACTGGGGAGAGATCTTTCTCCACCTTTGGCAAAGAGAAGTCACATCACGGCACGCTAGAGAGGAAAGAGTTTGATGCACTTCTGTCTAGCACACGTGCGCCTTACAAACCACCTTATTTGTCGCGGAAAAGGATTTGCTAGTCCCTTTCGCGTGGACATACCTGAGACAGCATGAATTTGCACAATAGTCGACCAACAAAAGCATCAAGTTTTCAACTTCATTATCTTGGCCATCCAGTTGTACATTACCTTTGGATTATTCTGCCAAGGGGGACAGAGAAATGTGATGGCCGACACTAGGACCTTATTGCTCTCAGCAGGCCTGAGAAATGAGTTGAAAtggaactgtaaaaaaaaacttaggGGTGACACATCTCACCTCTCTAAtctgtgtgtgcctgtttaCAGCACTATGTATATCTTAAAATGTCACTGAGCCCTTTAGATGTTTATACTCACACCGAGAAGCCAATTgtacagaaaaatatttgtgcATTATAAATGCAATATCACTGTTTTAGACTtgactgttttatattatttttgtgtggtcAGGTGTTCCCAAATTTATTCCAACTTTATAAGGAAGATTgtgatcatgttttttttcactagTGGGTCAGAACGGTGTTGGCCTACAACTTAATCAGAGACATTCTGTAGTTTATATCATGTGTGCGAAGTGTTTACTGTACTATTTCAAAgcttctaaataaatataaatctatatatatatatatataaatatatatacttttctgAAAGTGTGGTATCCATGGTCAGTTTCTTATCCACCATAGAGTTTCATAAACTGACATCCAGTGCTATAGAAGGCATACCGTGATACAGGGAGTTCATTTTGGAAGGCCTTATTTTCACTCCCACCAATTTaatttttgttggttttgttttttacattttggaataTGAAAATTCATGtctataaataaaaggaagtaATAAATTAGATTTGACATCATGGTAATTCTGTGTTATTGTAACCAAAAAGAAACGGGCAattaaaaaagctaaatatcaaaggtatacatacattcaaacacacacacgtcaaTGCCAAGAGGTGattaataaacagataaatacagaatatttt

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114944 lncRNA downstream 29001 16756430 ~ 16756667 (-) True G92156
TU114936 lncRNA downstream 354957 16430456 ~ 16430711 (-) True G92148
TU114934 lncRNA downstream 470146 16315045 ~ 16315522 (-) True G92146
TU114921 lncRNA downstream 603340 16182129 ~ 16182328 (-) True G92135
TU114920 lncRNA downstream 603605 16166639 ~ 16182063 (-) True G92134
TU114968 lncRNA upstream 128653 16926494 ~ 16926810 (-) True G92176
TU114971 lncRNA upstream 199379 16997220 ~ 16997504 (-) True G92179
TU114975 lncRNA upstream 363404 17161245 ~ 17161645 (-) True G92183
TU114993 lncRNA upstream 454589 17252430 ~ 17252630 (-) True G92200
TU115016 lncRNA upstream 590786 17388627 ~ 17394721 (-) False AMCG00017663
AMCG00017659 mRNA downstream 1550899 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017660 mRNA downstream 1571923 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017648 mRNA downstream 1705362 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017647 mRNA downstream 1711149 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017645 mRNA downstream 1733005 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017663 mRNA upstream 589643 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017664 mRNA upstream 627570 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017665 mRNA upstream 670765 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017670 mRNA upstream 717042 17514883 ~ 17531328 (-) True AMCG00017670
AMCG00017671 mRNA upstream 760603 17558444 ~ 17575772 (-) True AMCG00017671
TU114913 other downstream 754763 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 754763 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 918021 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 2305881 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 6288564 10361300 ~ 10497104 (-) True AMCG00017556
TU115048 other upstream 670764 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 1664943 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 2615146 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 2620360 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 6520285 23318126 ~ 23321954 (-) True AMCG00017780

Expression Profile