RNA id: AMCG00017663


Basic Information

Item Value
RNA id AMCG00017663
length 2338
RNA type mRNA
GC content 0.35
exon number 6
gene id AMCG00017663
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17387484 ~ 17395049 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGGGGTAGGAACTATTGTACAGACAGCTGACTGAAAAGAGgactttgaagtgctttttgcAGTTTGTTACTTACTCACAGACTGAGCTAAGTATATAAATTGCACAAGAAAGAAGTTTAGCCAGATACAAACAACTCTAGCCGAATGCAGTAACTCAAGATTtgtaactaaatatattttttacaataacGGAATACACCGCACCCATTCAACTCCataagATGGAATTTGATATTAAGACCACATGGGACAGCTTGCCAGTTAATCATGATCCTGTGAAAGTGAAATTTTCTCCAGGAAGTGGTGGCATGACACTGGAGGTGTTTGCTCCATTTTTTAATGACCCCCCATCTCCAGCTAGTCCTGCCGGCCACCCCTTTCCTGGGCTGTGGGACTATGAAGTTGTTGAATCATTCTTCTTAAACAGCAAAACGGAGCAATACCTGGAGGTTGAGTTTTGTCCTCATGGACAGCACTTAGTTTTATTACTCTCAGGAAGAGGAAATGCATTTACAgAAGGCCTTAGTTTAACCTTTGAAGCCACCATTTCTGGGAACAAGTGGAAGGGGAAAGCACTTATTCCCTGGGGCTATTTTCCACCTGATGTGGATAAAATGAATTCATATGCCATTCATGGATCTGGAGATGGAAGGACTTATGAGGCCCTCTATCCAATACCGAGAGATGAGTTAACCGAGAATCAAGCACCTAACTTCCATCGTCTGGAATACTTCAAAAACTTCAGATTACAAGGAATTATGGGAGAAGACTGGATGAAGCCCGAATCACAGTTTTGGAAGTAAAAGTAATCAGCAGAAATTATAACAATGTTGcccaaattattataatgatcacAATTCTGTgaagattattaaaaatgctgtaTTGTACCAGTAATAAGATATACAATGCATTATGATTGCTATTATTCATGCATTCATGTACCAAATCctcaaaaaaaatgttttgtcaatGTAATATATCTGTTTATAATCCACTTAATCTACTTATAATTGTTAATACAGATATTTTGGGAATCATTAAGACAATTCTTAACGGGAAAAAGCAGCAATTCAAGTTCTATTATGgtggagatatatatataaatatatatacaaatttataataatatctGAAAAAGTGACTCCATCTTCCATTATTTTACTCAAAATTCATAATTCTTCTATGcaagtattttaatacaatattgtaatttCAATACTTTTCAACCAATAAATTCCTGCAAGCTTCAGCATGctgcatttgtgtgtgagtTGATGGATTCTTGAATGTTCAACAACGAATAATGGAGAAAATGcttaatgttatgttatttttaataggcTATTTACACTCCCCAATTATTCAGCAAATAATTACtcataaatgttaatttatattatacCATTGTAAAACCAGAGTAACATGTAGAGAAGCCAAAGTTAAATCATGGCAAAGCAGAGAGAGATATAGTAAACCAAGGCCAAGCAAAGTACATGCCTGGTAGGTTCTTTATtgtctgaaatgaaaacatggaGACTGTAAGCATCTGATGCACCTAACCAATGTCTGTGCATCAGACATAGTGATGTTTGACCTTGTCTCCTCTATGAAAATAACCTTCAGTGTGATAAGCCTCATGCACTAGTCATTTAACTATAACTGGTTGGATAATCTTGCCTGAAGCTTTTCAGTAACTAATCAACTGTGGTTGTAAAATCGAAGTCTCATATTTATGAGAACTGTCTTGTCTTCCAAAAATGATAATCTGAACTACTGCatcattttttaatcttatcttaatgttttagttttttccacttgggttataaaactaaattgaagGCAATATTATGTATGTTGGTGAACAGTCTTGGAAACTAATACTGACTTGAACTAGCATTAACTGACACacctatacaaaatatattaatacatcacattgTGCAGAAGTCCAACATATTTGGCCTTGTCATAGCATACTTTTGACCCAGTTGTTATCACTCAAATTGTCAAtacatttctgtgcttttcacAATTAAAGTAACTGTAATTTGGGATTTAGAACCCAAGCGTGAAACATGAGCATGAACACGTCACACTGTATGCATACATGTGTAGTAGACCGTATAAATCTGTGTGTAGTTCAATGTTGATATCACACAGTATTTGCTCAGATGTTCTTGACAACTTGAAAGCACATCTTTCAATAAACAAGGCTGAAATTTAACTTGGTCCACTTAATCCAAACCTAGATACACTGCAGTGGAAAGGGCAGGTCTTTCTGTTGTAGACTTTTTCAATGCAGCTCTGTTGCCACCTAATGGTGAAGTAGG

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114993 lncRNA downstream 134854 17252430 ~ 17252630 (-) True G92200
TU114975 lncRNA downstream 225839 17161245 ~ 17161645 (-) True G92183
TU114971 lncRNA downstream 389980 16997220 ~ 16997504 (-) True G92179
TU114968 lncRNA downstream 460674 16926494 ~ 16926810 (-) True G92176
TU114944 lncRNA downstream 630817 16756430 ~ 16756667 (-) True G92156
TU115135 lncRNA upstream 319284 17713903 ~ 17714182 (-) True G92313
TU115166 lncRNA upstream 387029 17781648 ~ 17789734 (-) True AMCG00017675
TU115216 lncRNA upstream 459308 17853927 ~ 17855416 (-) True G92375
TU115229 lncRNA upstream 495723 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 710370 18104989 ~ 18105268 (-) True G92401
AMCG00017661 mRNA downstream 589643 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017659 mRNA downstream 2152715 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017660 mRNA downstream 2173739 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017648 mRNA downstream 2307178 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017647 mRNA downstream 2312965 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017664 mRNA upstream 30792 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017665 mRNA upstream 73987 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017670 mRNA upstream 120264 17514883 ~ 17531328 (-) True AMCG00017670
AMCG00017671 mRNA upstream 163825 17558444 ~ 17575772 (-) True AMCG00017671
AMCG00017672 mRNA upstream 194262 17588881 ~ 17599693 (-) True AMCG00017672
TU114913 other downstream 1356579 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1356579 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1519837 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 2907697 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 6890380 10361300 ~ 10497104 (-) True AMCG00017556
TU115048 other upstream 73986 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 1068165 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 2018368 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 2023582 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5923507 23318126 ~ 23321954 (-) True AMCG00017780

Expression Profile