RNA id: TU115016


Basic Information

Item Value
RNA id TU115016
length 1116
lncRNA type sense_over
GC content 0.33
exon number 5
gene id AMCG00017663
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17387484 ~ 17395049 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaatgtagttttaatattaatgcatGCTTTAGTTCTAATATCATTGTAATAGATAGAATTTAAATGCTATCtctatatttattatgatatgTTGGTTTATTTCCGGGGTAGGAACTATTGTACAGACAGCTGACTGAAAAGAGgactttgaagtgctttttgcAGTTTGTTACTTACTCACAGACTGAGCTAAGTATATAAATTGCACAAGAAAGAAGTTTAGCCAGATACAAACAACTCTAGCCGAATGCAGTAACTCAAGATTtgtaactaaatatattttttacaataacGGAATACACCGCACCCATTCAACTCCataagTTGTTGAATCATTCTTCTTAAACAGCAAAACGGAGCAATACCTGGAGGTTGAGTTTTGTCCTCATGGACAGCACTTAGTTTTATTACTCTCAGGAAGAGGAAATGCATTTACAgAAGGCCTTAGTTTAACCTTTGAAGCCACCATTTCTGGGAACAAGTGGAAGGGGAAAGCACTTATTCCCTGGGGCTATTTTCCACCTGATGTGGATAAAATGAATTCATATGCCATTCATGGATCTGGAGATGGAAGGACTTATGAGGCCCTCTATCCAATACCGAGAGATGAGTTAACCGAGAATCAAGCACCTAACTTCCATCGTCTGGAATACTTCAAAAACTTCAGATTACAAGGAATTATGGGAGAAGACTGGATGAAGCCCGAATCACAGTTTTGGAAGTAAAAGTAATCAGCAGAAATTATAACAATGTTGcccaaattattataatgatcacAATTCTGTgaagattattaaaaatgctgtaTTGTACCAGTAATAAGATATACAATGCATTATGATTGCTATTATTCATGCATTCATGTACCAAATCctcaaaaaaaatgttttgtcaatGTAATATATCTGTTTATAATCCACTTAATCTACTTATAATTGTTAATACAGATATTTTGGGAATCATTAAGACAATTCTTAACGGGAAAAAGCAGCAATTCAAGTTCTATTATGgtggagatatatatataaatatatatacaaatttataataatatctGAAAAAGTGACTCCATCTTCCATTATTTTACTCAAAATTCATAATTCTTCTATGcaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114993 lncRNA downstream 135997 17252430 ~ 17252630 (-) True G92200
TU114975 lncRNA downstream 226982 17161245 ~ 17161645 (-) True G92183
TU114971 lncRNA downstream 391123 16997220 ~ 16997504 (-) True G92179
TU114968 lncRNA downstream 461817 16926494 ~ 16926810 (-) True G92176
TU114944 lncRNA downstream 631960 16756430 ~ 16756667 (-) True G92156
TU115135 lncRNA upstream 319182 17713903 ~ 17714182 (-) True G92313
TU115166 lncRNA upstream 386927 17781648 ~ 17789734 (-) True AMCG00017675
TU115216 lncRNA upstream 459206 17853927 ~ 17855416 (-) True G92375
TU115229 lncRNA upstream 495621 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 710268 18104989 ~ 18105268 (-) True G92401
AMCG00017661 mRNA downstream 590786 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017659 mRNA downstream 2153858 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017660 mRNA downstream 2174882 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017648 mRNA downstream 2308321 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017647 mRNA downstream 2314108 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017664 mRNA upstream 30690 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017665 mRNA upstream 73885 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017670 mRNA upstream 120162 17514883 ~ 17531328 (-) True AMCG00017670
AMCG00017671 mRNA upstream 163723 17558444 ~ 17575772 (-) True AMCG00017671
AMCG00017672 mRNA upstream 194160 17588881 ~ 17599693 (-) True AMCG00017672
TU114913 other downstream 1357722 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1357722 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1520980 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 2908840 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 6891523 10361300 ~ 10497104 (-) True AMCG00017556
TU115048 other upstream 73884 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 1068063 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 2018266 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 2023480 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5923405 23318126 ~ 23321954 (-) True AMCG00017780

Expression Profile