RNA id: TU115048


Basic Information

Item Value
RNA id TU115048
length 3913
RNA type TUCP
GC content 0.40
exon number 3
gene id AMCG00017665
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17468605 ~ 17487497 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTATAGATGCTGCAACAGGGCATTCTCAGACAGTTGCTGCATGGCCCAGCCTGGGAGGGAATTGTCCAGCTTAATGGTGACTTCTTCAGCAGCGAGATTCCAGCAGCCGATGTTTACATTCTCGCCCGGATTATTCATGACTGGAAGGAGGAGAGGTGCGTTCAGCTGCTGAAGAGGCTCCACTCACTGTGCCAGCCAGGTGGTGGTGTCCTGATCGTGGAGGCCCTCCTTTTTGAGAACAAGAGAGGCCCAGTCATGGCTCAGATCTTCTCCCTCAACATGCTCGTCCAGACGGAGGGCAAGGAGCGCACCCCCTCCGAGTATTTCCGGATGCTCTCTGCCGCGGGATTCAAGGATACCCAAGTCCGGAGAACGGGAAAGTCTTACGATGCAATTCTGGGAGTTAAATAAGCACCAGGTAGAACACAGGCCACAGCCATCCTGTGAAATCGTCCCGTAAGTGTGCATGCCTCGTGCTCTGTATTTATCGTAATGAGTTTGTTattagacacagacacagaagcaAAAAGCGTTTGAGACCACAAAATAAGATGGTTAATCCCGCCTGATAAATGTTTGCACTAGATCATGACaatcacaaaaaatatgtacaagACCTTTTAAAGGGTTAATCcacactgtaataaaaatgaaaatgtaaactcTTCCACCTTGCTGCTCTAAATGTATTTAGtcattgtatatgtttttgctCCAGAACATCTGCATAATGGCAACACTGTCAATCTCCCAAATCAGAATTCTCAGCGCCAGCCTTAGCCAGGAAAGATGACTTCTGTGTGTTGGCTTTGAATGTACCAGTGCATGCCCAATGTGGCATCGGGAAGCTCCTTGAACTCTGTAAATCCTCACTTGTCTGTGTGGGAGGTATCATGGTGGGGGCAAAATATATCTGCTGAATTCTTGTGCCCCCATATGGTTATGTGTGAGTTTGTAGATATCAATGCAGTTTATATGAAGCTTGAGTTGTTAATTGCTTAGAAAACAATTTCTCATCACCTTCAGTTCACACCTCCACTGTAGCTATAGCACTGAAATATGTTTGTCACACAGACAAATGCATTTGTATGTAGAGTTTAAGAGGCTTACATTCACTGTTACATGTGAACTTGAGGaacatgatttttttcttttttcttttctggctAAGAAGAGTACATGGAGAAGTCAGATTTGGTACATTGACAGTGTgaaaaatgtgacaaaatgcatttgaaccCGCAAGGTGGGATGGTTTATTCTTGCCTTTTGTCTCTCTGTAGAGTTGCACTAACCCACACTACTGTTTTTCTCATTGTACAAAACTAACTGACCCAGCTGGTCAGGATTTTTTTTGCTTCTGCCCTTATCTGTGATCTTACCCTGATGAACACAGGGGAAACACTGTTGACCAGCTTTTCTGGCTGTTGAGCGCGATAATTTGACACCCACTTGACAatctgctgtgctgtttttggCACATCGTATTCCGAAGTGTGttctacatttatataatcCTGCACTTGGTCCCTACACTGCAAACCTGGGACTTCCTTGCActtaatgcatgtttttaaaacaaacaaaaaaacaaaaagtaatttagACCTCTGATAAAATACCTGTTAATTTAccacttctactactaatatGAAATGTTGAGGaatatataaatgaacacaACATAACCATGAAAACCAAATAGACTGACTTATGCACAGTAAGGTTCAGGTGTTTTTAGGGTCTGGTGACATACGTCAGCTGCTCTGAAGCTGCTTGAAACGTTGATTGCAAGTTAGGTAGGCCTGAAAGGTCCTGGCTGTAAATATCTGCTGCTGTTTCAGCCTGTGCTTTCACTGTTTTTAGTTTCCATCTTACTGACCCTTTACTCTTTAAATCAGACTTACCACTCAGCTAAACTGAGGAGATAAATCACACCTTTTAAagagtttttaatgttattatgaagaataattgtatttatttttggcttcAATTGGATAGTATGCTgccaaacacacaaagacattgCTATGGTTAGCAGAATTGCTTGGCAAACCGCTATCCCCTACCATCCTTTGATTCAAATGCACAAAGCGTTGAAAGAACAAAAGGTCCAACAGAAATCACTCCATTGACCACAGTGCAAATCGAGGGGTTTACTATAAGTGTCCATAGTTTTTGTTATCTAGTCAGTTACTATTTTACCGGATTAACCTAATCAGTAGAGATTGCCATGGTTGTGCACAAGATCAGCTCCCAGGTTCAGGAACAACGAAGCACTCTATTACAGCCGAGTTAGATCCAGACTAGTGAAATGGTTTTGAAGAAGCATATTGCCTTCCTTGCAAATGTAAGATTTAGAATAAAGTTATCTAGGAAAAAGCTGTACAGCATTGGCAGAGCGGGAGGTAGCAGATGTGCGGCTGAATCTCTAATTGCAAAGGATGCAGAAGAGGTCAATAAAGCATCTGTTTTGGGAAACCCTCACATAATGTATGATTGCAGAGGCACAGTGTATGACTTAGACTTTATCAACTTTTATTTCTAATCGTCAACTAGACCAAAAGGAGGGAGGTTATAGTGCAAGTGATTAAAAGTATCTGCCTCAAAGCTTCTAATCCTATTTGTGTACAGATTGTACAGCTGTGGTTCACCCCTGTGCACCCCTGTAAGGATTGTAAGGTCCACCCTGGGGCCTTCTCGTGTTTTGCAGAGTGTAAACCACTGGTCCCATCCCTTTTATCACTCTCCATTTAGCAGGTGACAAGGTGCAGCAGCTTCCTAGTGGATTGGTGAAACCCATCTCTTTGTGCCCAGTTTCATTAACTGCTAATACATGTTCTTTTCAGTTgagaatgacattttaatttgtcttcCATGGATGCCCTACAGGGTCTACTGCATGGGATTCCTCATTCTCTTTCTAGCACAGTAACCCAGTGGCTGAAGTGAAGTTGGGTAGAGATCACATGACCAGGGATATTGGTAGCATACAGTGATTGCTTTTACTGAATGAACAGAGCATTTTAAGCAAGTATGATTGAAGCAGACTTATTGACCCTCCTTGTTAACCTCTGACTTGCAtaggaaaaaagtgttttctagCTTTTGCATGctaatttgtgttttctgtttcattgattttatgaagtatattgtttttttttaaacactgaatttaTTACTCTGAGCTATTCATAATTTATCTTAATTACAAAAAGTAGttgcattttgaatgaatttCCCAATCCAAACAATGTATTACAATTGTATGTACATTAATGCTTTAATGAATTAACAATTAatagtgtaaaaataaagtatgaaGGTGTCAAAACCTTGCATCTGTGGAAAATCTAGATTCGTTACCACATTTTTGTCTTGCTTCCTAAAGCAGACTTACAATTTCTGGCATTTCCTGACATACAAGGGTAATTACAGCAAGAATCGGGTTGCctttccaaatgtttttctgCCAGGACAATGTTTGTTCTTAAATATCATGAGGGACATTAAATGGCCATCCTTGCCAAAGAAAGGCAGCTACTCTGTTCAAGAATATTAATTTGATCCTTCATCCTATTTCTTGCCAGTCTTGTCATTTCAACAGTACTACAGCGTTTAAAGCTAAGAAAGTGAGTTCCCTGTAATTGATGTATAAAGTGGATTGATTTTAGAGGCCTAGttattttacagtgcattttcttttcttatccAGGTGTTCGTAAGATAATCTAAACAAATTTGTAAGATATTCTGAAGGAGGTAATAAACTACCAAGGACATTTTTCATAGACAACTGCCTTGAAATGTTTTGTCACTGCCTTTGTCTATTTAACTTTTGATAATATTCTGTAAGTCACTTCCATGTGtgtcaaacaaaatgtgtataaaaatactaaatacgcT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115017 lncRNA downstream 73556 17388627 ~ 17395049 (-) False AMCG00017663
TU115016 lncRNA downstream 73884 17388627 ~ 17394721 (-) False AMCG00017663
TU114993 lncRNA downstream 215975 17252430 ~ 17252630 (-) True G92200
TU114975 lncRNA downstream 306960 17161245 ~ 17161645 (-) True G92183
TU114971 lncRNA downstream 471101 16997220 ~ 16997504 (-) True G92179
TU115135 lncRNA upstream 239564 17713903 ~ 17714182 (-) True G92313
TU115166 lncRNA upstream 307309 17781648 ~ 17789734 (-) True AMCG00017675
TU115216 lncRNA upstream 379588 17853927 ~ 17855416 (-) True G92375
TU115229 lncRNA upstream 416003 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 630650 18104989 ~ 18105268 (-) True G92401
AMCG00017664 mRNA downstream 6004 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017663 mRNA downstream 73986 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017661 mRNA downstream 670764 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017659 mRNA downstream 2233836 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017660 mRNA downstream 2254860 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017670 mRNA upstream 40544 17514883 ~ 17531328 (-) True AMCG00017670
AMCG00017671 mRNA upstream 84105 17558444 ~ 17575772 (-) True AMCG00017671
AMCG00017672 mRNA upstream 114542 17588881 ~ 17599693 (-) True AMCG00017672
AMCG00017669 mRNA upstream 146563 17620902 ~ 17664785 (-) True AMCG00017669
AMCG00017677 mRNA upstream 208823 17683162 ~ 17697440 (-) True AMCG00017677
TU114913 other downstream 1437700 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1437700 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1600958 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 2988818 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 6971501 10361300 ~ 10497104 (-) True AMCG00017556
TU115289 other upstream 988445 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1938648 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1943862 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5843787 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5843787 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile