RNA id: TU115097



Basic Information


Item Value
RNA id TU115097
length 932
RNA type TUCP
GC content 0.44
exon number 7
gene id AMCG00017668
representative False

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17601535 ~ 17620033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGAAGATAACCTTTTTTACCATTGTATTGGTATATCAGGTTACATGTTATATGAAAGTTAACATGTCTTTGTAATGCAGAGTATTTTAGCTGGaaagtacataaataatatgccagaacaaaaacacacataaaagttaatgattttgtttgaaGATGCTGTAGACAATGTTAGTTCTACAGGACTGATCTGCTAGCGTTTCATCATTGATTGAGGAAAAGGCATTCTGATCCGATTTGTTGCTGTGGAGCCAACAGGGCGACCAAGGTGACTACAATGACAAAGGGGGCCCAAGCCCAGGCCCAGGTCCAGGCAGTGTGTCCTTCATCCTCCCGGCCCAGTTGTTAGAGCTCCCTCACCGAGAGGCTGTCCTCAGCATGGCCTCCACTCCGGACTGCGGCCTGCTTCTGGTGGGCCAGGACGGCCTGCTGTCCCTCTGGTCTTCAAAGCTcaagctaaaaaaaaacaaagccctTCTTgaagaaaacaaacaaccagcCAGGACTCCCAAGTGGATAGCTGATACAACCTTAATGCCACAGTATAACAAGCTTGTTATTGGAACCTGTGATCGAGAATTACGCCTCTATGAGCTCTCCAATTTTGAACCATACTTCCAGATCACGGGTCTTGAAAGTTTACCTCTTCAGCTGGAGTACAGTTACACAGGTGAAGATGAATGCATTTTGCTCTATGGTGATGATCAGGGATgtgtcaatattattttaatctcaaaTGTGGGAGAGACACTAAGaaaCTGGTCAAAGTGTCCCCCAGTTGAGGGCATCCCGAGCAGTTACCTGGATAATATCTGTGACGGGCGTCAGGTCAGCTGTATTCGATGGAAGGTGCACAATGATTGGGTAACACagattaAATATGTTCATTCCATTCAGTCAGTGATATCCAGTTCGAATGATGAACACGCAGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU115073 lncRNA upstream 33372 17566643 ~ 17568163 (+) True G92267
TU115033 lncRNA upstream 155542 17445625 ~ 17445993 (+) True G92230
TU115032 lncRNA upstream 160571 17440658 ~ 17440964 (+) True G92229
TU115031 lncRNA upstream 161326 17439660 ~ 17440209 (+) True G92228
TU114990 lncRNA upstream 359471 17241816 ~ 17242064 (+) True G92197
TU115118 lncRNA downstream 72460 17678668 ~ 17685635 (+) True G92298
TU115137 lncRNA downstream 116742 17722950 ~ 17723515 (+) False AMCG00017674
TU115138 lncRNA downstream 118035 17724243 ~ 17724515 (+) True G92316
TU115139 lncRNA downstream 119212 17725420 ~ 17726983 (+) True G92317
TU115140 lncRNA downstream 122661 17728869 ~ 17729075 (+) True G92318
AMCG00017667 mRNA upstream 15710 17578055 ~ 17585825 (+) True AMCG00017667
AMCG00017666 mRNA upstream 90244 17509251 ~ 17511291 (+) True AMCG00017666
AMCG00017662 mRNA upstream 173200 17395731 ~ 17428335 (+) True AMCG00017662
AMCG00017656 mRNA upstream 1766485 15828929 ~ 15835050 (+) True AMCG00017656
AMCG00017658 mRNA upstream 1807088 15609983 ~ 15794447 (+) True AMCG00017658
AMCG00017673 mRNA downstream 70401 17676609 ~ 17692389 (+) True AMCG00017673
AMCG00017674 mRNA downstream 92715 17698923 ~ 17723950 (+) True AMCG00017674
AMCG00017679 mRNA downstream 148317 17754525 ~ 17782183 (+) True AMCG00017679
AMCG00017681 mRNA downstream 186106 17792314 ~ 17797219 (+) True AMCG00017681
AMCG00017678 mRNA downstream 204481 17810689 ~ 17824102 (+) True AMCG00017678
TU114914 other upstream 1466219 16135025 ~ 16135316 (+) True G92130
TU114906 other upstream 1733901 15867031 ~ 15867634 (+) True G92123
TU114828 other upstream 2485504 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 2517257 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 3562472 14036876 ~ 14039063 (+) False AMCG00017620
TU115411 other downstream 1467030 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 1795878 19402086 ~ 19411990 (+) False AMCG00017710
TU115496 other downstream 1815102 19421310 ~ 19423679 (+) False AMCG00017710
TU115510 other downstream 1837964 19444172 ~ 19528293 (+) True AMCG00017712
TU115788 other downstream 3193387 20799595 ~ 20815546 (+) False AMCG00017747

Expression Profile