RNA id: AMCG00017670


Basic Information

Item Value
RNA id AMCG00017670
length 2478
RNA type mRNA
GC content 0.58
exon number 15
gene id AMCG00017670
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17514883 ~ 17531328 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAAACATAAATGGGTCCCACTACCACTAGAAGACTCCAGTCAGGACGACACGGAAAGACCCAGCTCCAGAAACAGCTCGCACTCGCTCGCAGAACCCAACAGGGCGCTGCACAATAACAGAAGGAATGATTATGCAAGGAGCTGGCGGCGGGAGCGCAGGGACGACCTGGACGAAGTGTCGAGTGTGCGCAGTGAGGGAGGCAACGTCAGGGGGGGCTTCCGTGGCAGAGGCCGAAGccgaggaagagggagaggccGTGGCAGGGGAAACCTGCACATGCACTATGATTACTCCTATGGATACCGAGGGCAATATTCGGAGGACTCCGACTCATACCAGACTGAGTACAACGCCAACATGATGTATTACTACGATGATGGAACTGGAGTGCAGATGTACCCAGTGGATGAGAGCCTGCTTAAAGAGTACATCAAACGGCAAATTGAGTACTACTTCAGCCCTGAAAACCTGGAACGAGACTTCTTCCTGCGGAGGAAAATGGACGAGAATGGCTTCCTTCCCATTTCCTTGATAGCGAGCTTTCACCGAGTACAGGCACTAACCACAGATGTCAGCCTGATCTTCGAGGCACTGAAGGACAGCACCGTAGTGGAGATGACAGACCAGAAGATTCGGAGGAAAGTGGATCCTGAACGCTGGCCCATTCCTGGCCCCCCACCCCTTGATGCCCCCCGCACAGACTTCTCTCAGCTCATCAACTGCCCAGAGTTCATACCAGGCCAGGCCTTTACAGCGCAAGCCTCTGGCTCAGCCCCTAGTTCTCCTCGGGTTGGCAGTACCTTGCCGGCTAAGAAGAATGTAGAGTCCAGCAACCTGCAGTCTATGTCCAAGGGGCTTTCCACCAGCCTGCCCGACCTGGAGTCCGAGCCTTGGATAGAGGTCAAGAAACGCCACCGCCCCGCCCCTGCCAAGCCAAAGGAGAGCTCAGAGTGCCCCCCCCAGCCCGGCCCAAAGCCCGAGCCCGagcaggaggagctggactTCCTGTTTGACGAGGAGATTGAACAGCTCGCCGGCCGCAAGAACACCTTCACCGACTGGTCCGACGACGACTCGGACTACGAGATAGACGACCACGACGTCAACAAGATCCTCATCGTCACCCAGACCCCACCGCACCTGCGCAAGCACCCTGGCGGCGACCGCACCGGAAACCACGTCTCCCGCGCCAAGATCACGGCCGACCTGGCCAAGGCCATCAATGACGGCCTGTACTACTACGAGAAGGACCTGTGGACGGATGACAGCGAGATCGAGTACGCCAACATAAAGCAGGAGGTGGAGACCTTCAAGAAGCTGAACCTGATCAGTAAAGAGCAGTTTGAGAACCTGGCTCCTGAGCCTCCCATTGATCCCAACCAGGAGGTGCCCCCTGGCCCGCCCCGACCTCAAACAGAAGAGTTGGCAAACAAGCTCTTTGGTGCTGCAGAGCCTCCAGGCTCCAACCTTGCCCGATCCCTGCCAACGACTGTGCCAGATTCTCCCACGATGCACCTTGCTAGAACGCCCAAGACCCCCCGAACTCCCCGACTCCAGGACCCCAACAAAACCCCACGCTTCTACCCTGTTGTAAAGGAGGGGGGTCACATCGATGGACAGACCCCCAGGAAGAGGAAGACCAGGCACAGCTCGAACCCCCCCCTGGAGAGCCACGTGGGCTGGGTGATGGACTCCCGCGAGCACCGGCCACGCACCTCCTCTGTCAGgtctgtgtctctctcgctctgcagcagctccaatGCCTCCCCCTCAGAAGGCGCCCCGCTGGTTGGCAGCTATGGCTGCACCCCCCACTCACTGCCCAAGTTCCAGCACCCGTCCCACGAGCTGCTGCAGGAGAACGGCTTCACGCAGCAGGTCTACCACAAATACCGCAGGAGGTGCCTCAACGACCATTTCAACAGGAAGATGTACGAGGAGTTTAAACTGTACTCATTAGAAGATGCCAAGGAAAACTACAGgtaCGGATTGGAGTGTCTCTTCCGCTTCTACAGCTACGGTTTGGAGCGGAGATTCCGGCCAGATATCTTTAAGGACTTTCAGGAAGAAACTATCAGGGATTATGAAACCGGACAGCTGTATGGTTTGGAGAAGTTCTGGGCCTTCCTGAAATACTCTCAGACCAAGAACCAGCCCATCGACCCCAAACTGCAGAAGCACCTCAGCAAGTTCAAGCGACTCGAAGACTTCAGAGTGGATCCCCCGATGGGAGAGGACGTGGGCCGCAGGAGACGGCGTTCCTCTTCGACGGGTGAGGACGGGGGCCGTCGGAGACACCCTTCCAACTCCTCCAAGCCGGGCAACGCTGCTAAACCTGCTCCCGCTCACCCACCCCCAGCGCCCAGTGCCACtgccacctcctcctcctctcacaACGCACCCAAAGACAACGCCGACCGGAGGAGAGCGGAGCCGGCGGCCGCCAAAGCCAAAGACACTCAGACAGCTGGCAAA

Function

GO: NA

KEGG:

id description
K18757 LARP1; la-related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115017 lncRNA downstream 119834 17388627 ~ 17395049 (-) False AMCG00017663
TU115016 lncRNA downstream 120162 17388627 ~ 17394721 (-) False AMCG00017663
TU114993 lncRNA downstream 262253 17252430 ~ 17252630 (-) True G92200
TU114975 lncRNA downstream 353238 17161245 ~ 17161645 (-) True G92183
TU114971 lncRNA downstream 517379 16997220 ~ 16997504 (-) True G92179
TU115135 lncRNA upstream 182575 17713903 ~ 17714182 (-) True G92313
TU115166 lncRNA upstream 250320 17781648 ~ 17789734 (-) True AMCG00017675
TU115216 lncRNA upstream 322599 17853927 ~ 17855416 (-) True G92375
TU115229 lncRNA upstream 359014 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 573661 18104989 ~ 18105268 (-) True G92401
AMCG00017665 mRNA downstream 27386 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017664 mRNA downstream 52282 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017663 mRNA downstream 120264 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017661 mRNA downstream 717042 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017659 mRNA downstream 2280114 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017671 mRNA upstream 27116 17558444 ~ 17575772 (-) True AMCG00017671
AMCG00017672 mRNA upstream 57553 17588881 ~ 17599693 (-) True AMCG00017672
AMCG00017669 mRNA upstream 89574 17620902 ~ 17664785 (-) True AMCG00017669
AMCG00017677 mRNA upstream 151834 17683162 ~ 17697440 (-) True AMCG00017677
AMCG00017676 mRNA upstream 189773 17721101 ~ 17734579 (-) True AMCG00017676
TU115048 other downstream 40544 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 1483978 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1483978 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1647236 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 3035096 14433158 ~ 14479787 (-) True AMCG00017631
TU115289 other upstream 931456 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1881659 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1886873 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5786798 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5786798 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile