RNA id: AMCG00017671


Basic Information

Item Value
RNA id AMCG00017671
length 4622
RNA type mRNA
GC content 0.39
exon number 11
gene id AMCG00017671
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17558444 ~ 17575772 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGGTCACACGAAATCGATTAACATGTCTGAGTTCGCTCGCTGAAATCATGCACCTTGAATGCGATAAGATTAGATTCATTTATGTGTATTAATACTGTTTTCTAAGATGCAAAGGTCCGTGTTAGCATGGAGAAGAGTCTGTCCGTTTAGGGAAACCATCAGGTTAAAGGATATTAACGCAGTTTGACAGAAGCCCACGGTCTGCAACTCCTCTATTCACCGAATGCCTTGTATTTGCTAATGGGTGTGAGCCGGCTGGATGTTCTCTACAGAAGGCTTCTCCTAACCAAGCTGTTCATACAAGGTTGGGGAAAGCCGGATGATTTAAGAAGaatattcGAATTCCGGAAAATCATTGGGAATAGAGAGAAGTGTAAGAATTTGGTTCCAAAAGATTATCCAGTCTTCATAGACAAGGTAGAGGAAGAAAAGGAATGTAAAATCCTTAATGGACATTTCATATCCCCTCTGGAGCACTTTGTTCCAGGCATCTTACCAGCAGAGTCTGTGAAAGCCAGGTTCCAGTTAATATTGCCCAAAGAGTGGAAGAACAAACACAAGCCAGTATGCATTCACCTTGCGGGCACAGGAGACCATTTCTTTTGGAGAAGACGCACACTCATGGCCCGACCGATGAtaaaggagacctgcatgTCATtaccttaatttaaaatacatggatACAGAAAACCAAAAGACCAACTGTGAGTAATCCATTCCATTCCCCCTGGCTAAAATGATTCTGTTTCCATCCATGTATTTCCATAGCGGCAATTGACCACTCCAATATATAAATAGACCCACATAGTGCAATGGTTGTCATGGTGctcacagctgttttatttaatgcgGAACATGTTTGTTCCATGCTAGTTTTTTTCTTGAGATTTCCCCGAGTTTAATAATTTTGCATGCTGGATTGTGTTTTGAGCAATGTCAGCACTGTCACAGTACTGCAATAAACATCACTTCTGCTCTGAATGGTCTGTACAGGAGGCAGGCtggtatgaaaatgtaattgagacAGGAATATTTGCATTTGTCTGGTGTCTGGTGTCTGGAGTCTGGTGTCTCAGTAGTAAAGTTGTTCAAAGTATAGgcagaagcaaaacaaaaatatgaaaacaaacctgAAGACTTTGAATTTAATAATGTACTCTTTAGGGGGCTTAAGACATGTTATACCTTTTAATAATACTATTAGAAGAGAGTCATGAAGCAGTCAACATGAgagccagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtacaGTGGAGGTCAATGGGAAGTCAGGGCAGTACTGAGGTAGTCCTTGTCTTTGTGGCCAGGCGCTCCAGTCTGAAGAATGTGTCCGACCTGTTTGTGATGGGGGGGGCTCTGGTGCTGGAGTCTGCTGCTCTGCTGCAATGGCTCGAGAGGGAGGGCTACTGGCCTCTGGGAATGACCGGCATCTCCATGGGCGGACATATGGCATCTTTAGCCGTAACAAACTGGCCGAAGCCAATCCCACTGGTTCCATGTCTGTCCTGGTCCACGGCTTCAACTGTTTTTACAACGACAGATTCCTTTAAGATGGGCCAGGACTTTGTCAAGAATGCCCCCATCAGCCTGGACAATCTCCAGCACCTTGACATCTCCAAGGACATCCTGGACTTCCAGGGGACTGACACCGAACGACTTCTGGGGACCGAGCGGTTCCACTCACTGGAGGCACACAACACAGATATCAGGGCCTCGGGACGGAGGCTCGGGATGGATGGGGGGCAGAGAGTGGGCTTCCTGGACCAGACCCTGTCAGCCGTGAGCAGCAGCAGTCCACACATGGACATGCTCAGCGCCAAGACCATCACCAAGGAGGACCGGAGGCGGCAGTCCCTGCAGCACGAGTCCCTCTGTTTTATGAAGGGCGTTATGGATGAATGCACACATATTGCCAACTTTTCTGTCCCCGTGGACCCCAGCCTGATCATCGTGGTCCAGGCCAAGGAGGACGCCTACATACCCAGGGCGGGGGTGCGCAGCCTACAGGAGATCTGGCCCGGCTGTGAGGTGCGCTACCTGAACGGGGGCCACATCAGTGCCTACCTCTTCAAACAAGGACTGTTCAGGCAAGCAATTTATGATGCCTTCGACCGTTTCCTTAAGAAGTATTCGGTCTCTAGTTGAGAAGTTTTGAGCAGCTCTCACCACAAGCGCACTTAAACCACGGAAGGTTTTCTTGAAGGAAATGAACCGAGAACTGAAATGATCTGCAAGGCTCTTTGTACCATGTAACCGTCTGCTTTGAAATTGAAACATTGCCCATGACATCATCTGAAGATGTGGTGCTACAGACAATGTAGTTGGTTGTTGGTAGTGAAAACACACTATTTTGAAATCTAAACGGTAAAAGGGATATGAGGCCCCATTTGAAAGGTGTCTCAGAAGAAATACCTCTTTAACAAGTATAGCTTAcatcattttattatacattatatttctaaatgcaGCAGATTCTCATAAAGATTATTCACCTTCTCAGTTGTTATTCATGCTATTTccccccagaaaaaaaaagcctaatGACCTTGTTGTAAGTACACTTAAAAAGGtacaatgaaatgaaaggcaTTTTTTAAGTTACTTCAGTAATTTATTGGAAAGAATGAATTGTGTTGAAAAATAGTTTATAAATCAAGTGTTCTTTGCCTGTTTGAACAACTAGGATAAGCTTTTTAAGTCTTTAATATTATATGCCACTAAAAGATGGccatcatgtattttttaaacaaaacttttCATTGTCAGCATTTGAAATCTGTTAGGTGAAACTCCTGAATGTTGCACTGATAGCCCTGGAAgataatatgcatgttttcctttctctttgAATATACACCTCATTGAACCAGCTACTGTAATGTAAAGGACTTTTTAAAAACTAGTTATATGTTTTCAGGAAAGGTGACTTGCTGAGGAATGcaatacataaacattaattatgtttaccacaaatataatttacttcAGCCTGGACAGGTTTAATATCATGTAGTATGTTGCAATGTATGTAACTTAACAGTACTCTGAACCTGTTTATGTTAAAGAAGCACATTATCTCTGATCTGGTTTAACTAGACTTGTTTCTGTGCTTGTGACCAACACTGCTCAGCAGTAGagtttctgtgtgtatataacCAGGGTATACGAGGGTCTGCGGGCAGTTTTTTACATGTATTGGTTGGTAATGATAATCAAGGATGCCTGTGATAAAGCAGGTTGTACTTTCTATTATGAAGTACTTTTGAGTTCCTGCCTGCCTTTGTAGTTGCTTGcaatatacattcatatttgctcTGAGTATTTAATTCtcacttgattttttttctactttaaatGGCTTTGTCTTTTAACCCGTATGTTATAAATTACACAGAAAGGTAACTCATTTGTTACtgattttatacatgtatataaagaAATGATTATAAATACTTAGATCACCGGCTTTAGAAAGAGCAATGATCTGTATTCAGTAAATGTACAATTTCATTCCGGGTGATGTTGAATTTCCAGGTCAATTTACTGAACTATAACAGtactttttaaacacaaatcatacaattgttctttttttgtattagttgttcaattgctttattaatgtaatacCAGTGTGGGGAGGCACCTGCCATTGaatgtaattcattattaatgttgtGCCTTAGTTTTGTGCACTAAAacatgaattacatttatttattttaattgtacatatCTTTAAGTTTACAATAAACCATTAAatgatttgtttctttgatttagTTAATGTTAAGTTAATGGGTTCATTGTTAAGAATAGTTCATTCAAATTATAGGGAAATGTAGGcattgaaatgtgattttagaACTTTATTCATTTTAGGGACAGAATTACAGGGAGATACACATAgacttttgcatttaaatatataggtaAAATGTTAAACTTGGTGGTCTGTCTTGAAATACACACACCTAATGCAGTAAGCTGGTATACAAAAACAGTAAAGATGTACAAAGGGTATTTAAATAAGATGCACTGGTACAGCAAGCATGCTGAagaacaaaaatgaagaaatctGTTTGGCAAGTGAATCCAGTTTGATCAGCTTTTTAAATCTtgtaaaaacacagacaattcTAACAAGATATAATCTGGTTAAACTACACTTGAAATAGTAGCTAGACTTCtggaaaatacattcaaaacatgTTAGTTATGATGAAAGTTTTGCAgatcagaaaaatataattttcaattgCCATTAAAGTACCTGCTAGATTACTTTTATgtaattttcttaaatgtaggcatgtagtttgattttaaaaggcagcattaaaacaaatctggagACTACTGTAACTCTAAAGCATTGAAATCTGAgatattttctatttatgttGCAGATATTGTATTGAACCCATAAATGCAGTACtaaataaaagtgtaaaacgtaatgttttattgttcccTGTTTGAGTTCTCCCATTTTTATGTAGTACtcaaaaaacatgcatttgttagtggtatatcattttaaatacaaataacaaggAGTCACTAATGGACATAGTAGGAAAACAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115017 lncRNA downstream 163395 17388627 ~ 17395049 (-) False AMCG00017663
TU115016 lncRNA downstream 163723 17388627 ~ 17394721 (-) False AMCG00017663
TU114993 lncRNA downstream 305814 17252430 ~ 17252630 (-) True G92200
TU114975 lncRNA downstream 396799 17161245 ~ 17161645 (-) True G92183
TU114971 lncRNA downstream 560940 16997220 ~ 16997504 (-) True G92179
TU115135 lncRNA upstream 138131 17713903 ~ 17714182 (-) True G92313
TU115166 lncRNA upstream 205876 17781648 ~ 17789734 (-) True AMCG00017675
TU115216 lncRNA upstream 278155 17853927 ~ 17855416 (-) True G92375
TU115229 lncRNA upstream 314570 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 529217 18104989 ~ 18105268 (-) True G92401
AMCG00017670 mRNA downstream 27116 17514883 ~ 17531328 (-) True AMCG00017670
AMCG00017665 mRNA downstream 70947 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017664 mRNA downstream 95843 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017663 mRNA downstream 163825 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017661 mRNA downstream 760603 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017672 mRNA upstream 13109 17588881 ~ 17599693 (-) True AMCG00017672
AMCG00017669 mRNA upstream 45130 17620902 ~ 17664785 (-) True AMCG00017669
AMCG00017677 mRNA upstream 107390 17683162 ~ 17697440 (-) True AMCG00017677
AMCG00017676 mRNA upstream 145329 17721101 ~ 17734579 (-) True AMCG00017676
AMCG00017675 mRNA upstream 211162 17786934 ~ 17789749 (-) False AMCG00017675
TU115048 other downstream 84105 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 1527539 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1527539 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1690797 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 3078657 14433158 ~ 14479787 (-) True AMCG00017631
TU115289 other upstream 887012 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1837215 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1842429 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5742354 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5742354 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile