RNA id: TU115166


Basic Information

Item Value
RNA id TU115166
length 3891
lncRNA type sense_over
GC content 0.42
exon number 4
gene id AMCG00017675
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17781648 ~ 17789749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGCGTGGGACGTAAAGATGGCGGTCGCCTTGAGAAGTGTCTCAGGGTTGCTGCGCCCCCTGGTCCCGTTAGCCCGGGCTTCGTGCTGCGAGGCCGGGTGGGCCACACAGCTGTCCGCCAGGTTCTCCACTCTCAGACTGGGCCACAGCGTCCAGAGGCCGGCGCTGTCCTCTGTGTGGGTCTCCGCGCCCAGACACGGCTGCCTGCCCGCTTCACAAAGTATTCTCCAGAGCATCCCTCCTCTGCTGCCTGGTCTCGCCCTCCAACCAACTAGGCTTCACAAGAGTGCTACTCAACGTACGtctcaaacatatatatttactgaaaaccaAAACCTGACCGGTTGAGTGGTCATTTCTCTGATATTGTAAGCCCTGGTGaggctttttaaattaagcacaAGCCTGAGCAATAACAAGTCAGATTGTTTTCTCTTCTCCATACAAACATGCTGTGTGCTTAATGCTTCTGGTTGTCTTCACAGCTGTGGGCATTGGGTTCAGGCCCAATAACCAGGTATCTGAGCTAGTGTTGTACTGTGCATTACTATGGCTTTGACAGACAGCCTGCTATGGATGTTacatatttgcatgtttgtCAGAGGATCTTATTATCTACAGGAGTTACCTGGATAGTAGCAATTACTTGTACTCATGTTCTCATCTTTTTCCCATTCTGGAGCTCAATTCCGACAGATTTTTAAACATGGGCAGGTCTGTCTCTACAAGTACATTTCAAAACGTGTTAAGTGGTTGCGGATCAGTTTGGCATCCTTTCCTCTTAAAGGTGCACAGTGGCATATATTGCAGATGTTTTGCTCAGGGGGCGGGGggaacattaatataaaaaaagagacagATGTATGCATGTTAACAAACCATTCAGAATCGGgttcaaaaaagtaaaaaagtgtGCTGACTAAACTGGATATGAAACCgagagagaaagcagagatGTAAGAAATTGTAGATATAGGTACAATTTTTCAGTGTCTGAAGACATCTGAGCAGTGCAGTAGTTCAGAGTGCAGGTGGAAGGCCGTGCTGAGTCCTGGCCCGGTCAACAGTGTTCAACACACACGCGCTGGCACCAAGAGACGGGCACTGGCTTTATGGAGCTAAGCCAGCTCAGCtcaataaaaccaaacacaacGTCTGCAGTAacaatttgtaaatattaacaCACAAAGCAAGTAAAAAGGctcatacacagacacacagacattgcTCTGTAGTGAAAAGAGTAGTTGTATAGCCAGGGTTCTTCCTCCTTCCTTGTGATGATGCATACAGTAGCCTCAtagatggggaaaaaagtaaattaaaacagtcATTAGATATAAATACCACTTTTCTCCTCTACATTATCATAATTCTTGGCCATCTCCATCTACTTAAACTGCTTACAATCCATCTAGTCACGTAttcttaaaaccttaaaaaaaacagtgcagctctgcTGTCAACATGAAGGTCACATTTACCGTTCAGTTCCAATCTGACCTTGAGTCTTTGAGTCTGATCTACAGCTttccataaaatacaatatccATGTTCAAGTATATTACTGCTCTCGTGTTGTCAGGGTCTTGACACTCTAGCATCTTGATATATAGTTATGACATGGATTCCTCATTGTATGAGTGTGCTACGTATGAGCCAAAATGTTTAGTTATTCCCCCTACATGATAGCAATCCTTATATTTTGCAGAAGGAGGTCTTTGTACTGTTGCTATTAGACATTTTCATTTAGTCCTTCTATAATACTATAACTGCCAAGAATTCCTCAGGATTGGTGATATGCTTGTCTCTgcaaaacaactaaattacaTGAAACATCTATGCATGTTAAATGTGGGTTATTATTTAATCGATGTATGTGTCCTTCTGGTATATTGTCGACTTTCAGAATGAAACCCTGCAAACAGCTCTTTGTTGTAAAAGGAtgtttgcacatttaaaaacacaagctgACATGCAATTACTGAATCAAGACAGTTATCTTTGGGGAACCAcagaaattaacattaacactCTTTTGGGGTTCTTGGAGCTCAGAATGCTCTAATAAAAAGgtgaattattttgtaaaggttaataaaaagtacaattacATAACATGTTGTTGTCTAAAATGCATGATTGTGTTGCAAGGCTGCTTCATCACACTACATCACTAAGCGACAATACACCATCATGTCTAAATGTAATTCAGTGCTCTACATATCCCTGTGTTAGTTTCTCCTGGGAGGACCAAAACCCAATATCTCATACTATAGTTATACACACTAAAACCTGTAGTACAGATTCAGCTGTAACACTTATGCACACTACTGTATATTGTTACTGTActttcatattgtatttatctGTTACATCTACATAAAAGCATTCCTATACCTaatagaattatattattatgcgTAGTAGCTTATTTGGACAGTGCTACAGACCAATCCTCCATTGTAAAGGTGTGAAAGGCAAAACAACTCACTTTCTCCAGAAAAGCTATAGAATCCCCATAATTATTACACACCACAACTATCTTCAGACAAATCCAAATGCTAAAATCTCAAAACAGCAGCTCTGCCGCAGCCACAACTTGTGATATGTATCTGTAAAGTActactttaaatatttgaaaattgaGTCTGAGGAActgtaaatgcaaatgcacCTTATATTCTTTCCTACCTTAAATATTCATTCTGTTGTTACATACagttaagaaaaacacaattctcTAGCAGCTACAGCCCTGTGTCCTACCACTCTCTCCTGCCCCTGCTGGAGGTGTAACTACAGGCAGCACAACTGACTATAGCGACCTTGACAAGCCCCGCCAAGCCTAACGTCTGAATCATCTCCCCCTTGCTGTTGCAAATAGAACAACACTGAAAGACTGAGAGGCCTGTCACAATGCTGCTGTGCTTGTGCGCTATTTTCGAGTGAACTTTGGCTTCCATGTAACAGTGACAAACACAGAGTGTGGCATGCATGGTTTTGCAGTACACCATTTTTCCTAAAAGAGGAGCGATGGCACCTTAAAAGCGAACAgatgcacaaacaaacacacaagataATAAAAATACCCCATAACAAACATGAATGCACAGATGCCCCGTGAAGAGATGATGTCATCTCCACTGCAAGCTGCATATACGGCATCCCAGTTGCTTGCTGCTGATTGATTTTACTCCTTCTCCAGAGAAgctgctgctttttatttttttacatgtgtttttgttttgtgttccttTCTTTCCCATCTGTTCTCTCAGGTTAAGGCAGCTAAGCGATCTGGGTGTGTTTTGATTGGCAGCGTCCCGTGGCCTGGCGCAGTCACATGGTTTCACTGTTTGATGACGAGGTACTCTTTGATCTGGGGCGAGGCCTCAGGACTCTAGGAGGaggctgggggagagagagagtgagagagagagaaggagggagggagagagagagggaggaatcGGGGGAGCCTGTTTTAGCTTCAAGAGATCAAGTACTGCACCAGAAAACCATTTCAAAGATATCAAAGACAAAGTTGTGAAGTGTCCCCAAAAGAGCAGCAGTAGAAGGATTAATAATAAGAAGGTTTTAGTTCTGTCACAAGGTCTACCCTGCCCTGCCCTAATTTGGGGGGGCAATTGAATTGATAGTAttgactttagtttttttatattgtagaaaatgttaattgtattcAGCAATGTAGTGAAATACAACTATTTTGGGCAGTATAAAGTTGTTCTGTATTGCAGAGAAATAATATAATagaagtttcctcagacagCTCAAGAAAACAGTCATCAAAAGCATGCTTGTACGTCCACACATCTGTCAGTAGAGGGAAGCAAAGCTCTTCTCTGTGCATTACTTGAAATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115135 lncRNA downstream 67466 17713903 ~ 17714182 (-) True G92313
TU115017 lncRNA downstream 386599 17388627 ~ 17395049 (-) False AMCG00017663
TU115016 lncRNA downstream 386927 17388627 ~ 17394721 (-) False AMCG00017663
TU114993 lncRNA downstream 529018 17252430 ~ 17252630 (-) True G92200
TU114975 lncRNA downstream 620003 17161245 ~ 17161645 (-) True G92183
TU115216 lncRNA upstream 64193 17853927 ~ 17855416 (-) True G92375
TU115229 lncRNA upstream 100608 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 315255 18104989 ~ 18105268 (-) True G92401
TU115281 lncRNA upstream 598071 18387805 ~ 18452812 (-) True G92428
TU115287 lncRNA upstream 669835 18459569 ~ 18459816 (-) True G92434
AMCG00017676 mRNA downstream 47069 17721101 ~ 17734579 (-) True AMCG00017676
AMCG00017677 mRNA downstream 84208 17683162 ~ 17697440 (-) True AMCG00017677
AMCG00017669 mRNA downstream 116863 17620902 ~ 17664785 (-) True AMCG00017669
AMCG00017672 mRNA downstream 181955 17588881 ~ 17599693 (-) True AMCG00017672
AMCG00017671 mRNA downstream 205876 17558444 ~ 17575772 (-) True AMCG00017671
AMCG00017680 mRNA upstream 35324 17825058 ~ 17833817 (-) True AMCG00017680
AMCG00017684 mRNA upstream 138699 17928433 ~ 17942165 (-) True AMCG00017684
AMCG00017688 mRNA upstream 384417 18174151 ~ 18177011 (-) True AMCG00017688
AMCG00017686 mRNA upstream 391831 18181565 ~ 18189353 (-) True AMCG00017686
AMCG00017687 mRNA upstream 442674 18232408 ~ 18268748 (-) True AMCG00017687
TU115048 other downstream 307309 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 1750743 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1750743 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1914001 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 3301861 14433158 ~ 14479787 (-) True AMCG00017631
TU115289 other upstream 673050 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1623253 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1628467 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5528392 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5528392 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile