RNA id: AMCG00017676


Basic Information

Item Value
RNA id AMCG00017676
length 5757
RNA type mRNA
GC content 0.48
exon number 25
gene id AMCG00017676
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17721101 ~ 17734579 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGAATAGAGCGACCGTCCTTGAATCGGTTTCAAATCGGGTTTGTGGTATGAGTTAGCCAAcaactggcttttttttttttaaacgtttctttaaaaaaaaaaatactttcaatttCGAaatgacctttttgttttgcaactcAAGTAGCTTCTGAATGAATAAGATACCGTATTTGTTCCGTTTGATTTGTTTCCTGCCTGTAATTTGGTTTTAACGGTGCATCAGATATTACACAAGGCGAGCTCGTTATGTGGTCGTGTGATTGAATTGAAAATACAGATCTTGATCGTTGCGCGTCTCTGTTCAAGTGCGGTCCGATGAGATATTCATAAAGTTGCATATTTCCGATCTGTTTGCACACTGGAAAGATCTGATCTGCAGGGAGGTCGTAGGCGGTAGAAAATGTGCAACAAAACCCGTCAGCTCCTCGTTGGCAGAGGGTTTCTGTGTGTCAGCGGAGAAACCCCTTTGAAAGTGGAAGAAATCGCCACATGGGACTGGAAATCGGGGAAGATCAGAGCCGTCTCTCATCGGGATGTGTCGGACCAAAACCTGAAGgtttttgtggAGTTTGATGAAGAGAAGATGGAGCGCCGGAGGTGGATCAAAGTGTACGAGCCCCTGATGAAGGTCTTTCTGGTTGAGCACACCCTGGGTCTGGCTCACAGGCAGTGTCCTCAGGGGGCTGCCAGTCTTCAATGGCCAGCTGTGgtttttaagCCTCTAGTGGATGTGGTAGGACTGGTTCTTATCCCTGTGGAATATCTCTTAATGAAGGAAAGGAGCTTCATCCCTGCAGAAGCTGTGCAGCCACTTGAGagATTAAGTTGCTTAGGGTTTTCTCTAAGAGACTTCCAAGAACTTCAGAAGGAGGTTAAAGCCTGGATAAGAAAGAATACAGCTGTGCAGCTTTTGGTGCGAGGCAACCAAAACCTGATTGGCTGTAAGGTGAGGCTGTACTGCGTGGACTCGGCCTGCTCGTGGTGTATTGCTACAGTTGTGAATCAGGATCAAGAGGTTCAGACCCTGCAGGTTGAACATGAGCAGATTGGATGTTTGCAGTGTGTAGACCCAGCTTTATTGGAAATGGAGCTGTTGCATATTGACTTGGAGAATGCTGgaaCCACACATGTGAAAAGAAAACCTAATGAGGAGATCGAAGACCTTGaaaccaaaaggaaaaaaataagctgCGGTTCCTCTGTTGAAAGTGAAATGCCAGGTTCTCATACAGCAGAGTCAGCACTTAAAAATCCAAACCTCGAGCAGACAGCTGTGATGCCCCTTGAAGCTGGAAGCTCCATCCCAGGCTGTGCTCAGATTGAGGAGCGCTCAATGGGAGACCCTGCTGCCAAACTGGGCGTGGCAGATAAGGACCATGCTGGGGAGAAGCCTGTGGATCATTCCAGAGCTGGAGAGAGCAGCACTGTCCCCGAGAAAACTGAAGGAGGTCACTGCAGCTTTAAGGCCATGCCTTCCATTCCCCCCCTGTCCTCCGAGGTGTTGCTGGGCAGCGCTGCCTCCTCCCATGTGAGTCAACAACCGGGGCAGAGCAGCACACCCCTGCTGCCACGCTCCCCCCCCAGCATCCAGGCCCAGACACCGGCAGGTAATTATGCCATGAACAGCCCCATGTCTGTGGGTGAGCCCAACTCAATTCAGAGCAGAATGGCACAGAATAACCCTCCGAATCCATTTGAAGCAGCATTCAGCTTGTTCTTCACACCGACATCCACCGCTCAGCAGCTGTCCGGCTCTGCCTCCCCCCCGAAGACCAACACGCCACCAGCCCCGCCATACCAGCAGCTCAAAAGCCTGCTCACAGGGGATTGGCACAGACAGGCCACATCCCCTGATCTCTTCAAGGGCTCCTCTGCCACAGTGATGCCCACCTGCCTCTCTGAACAAAAGCCATGCAGACAGAGTGTGGTGAAGGAGGCTGTGAAGACTACAGACGGGAAGCTGGGTCAGACCGTCCTCGGGAAGGAAGACCAGAAGCCAGACTCGAATGAAGAGGAGGATCTGAAGGCTTTGCATGCAAGTGGCAGTCCTGTTAATAGCAATGCATTGCCGTCCAATTCTATTCTGAACGACCCTTCCACGATGCAGCGGCTGCAGCAGACAGGGGAGACCTTCCTGCAGGATGGCTCATGTAACAGCATCGCACCCCACCTGCACAAGTGCCGCGAGTGCCGGCTGGCCAGCTACCGCCGCAGGACCGACCAGTCGGACACGGCCGTCTTCTGCAGGTTCTTTCTCTTCAGAAGGCTTCAGTTTACCAAACACGGCCTTCTGCGTGAGGGAGGTTTCTTGGCTCCCAGCAAGTACACGGCCGAGGCTCTCAGCCTCTGGATGCCCGTGGGGAGCCGAGTGAAGGGCCTGGACCTGGACACGGCCAAGTATGTCCTGGCCAACATCGGAGACCAGTTCTGTCAGCTGGTCATGCAGGAAAAGGAGGTCATCTCTACAGTGGAGCCGAACAGGGCCGTTGTCTGGAAGCGCGCGGTCCGTGGAGTGCGGGACATGTGCGATGCCTGCGACACCACGCTCTTCAACATCCACTGGGTCTGTCCCAAGTGTGGCTTTGGTGTATGTCTCGACTGCTTCAGGAACAAGAACCACATCGAGACCAGAGGAGCGGTTTTCTCCTGGATGAAGTGTGTGAAGGGACAGCCCCATGAACCCGAAAACTTGATGCCAACTCAGATAATTCCTGGAACAGCACTGTATGATGTTTGTGACATAGTTCATTCTGTTAGAGGAAAATGGGGAATTAAAGCCAACTGTCCGTGTTCCACCAGACACTACAGAGCAACGTCAAAGCCACTTGTGAAAGAGGAAAGAGAACCTCAGAATTGTGCCCCTTCTGAAAATCCCTCACTGTTGTCTTCACTTCCAAACAAGTTCAGGGAAGCAGTTCCTTCCACTTCAGCCAGTACTGCAGTAACAGCCTCTGAGCCAGTGAGCAAGCTCCACACAGCCAGCCACCAAAATGCATTCAGCTGGATCTCTGAAATGGGAACCCACAGTGTCAATAAGGAGAACAAGGGGAAGGTCCTCACAGCTGCAGTGGCTGAGGCCAAAAGGCACAGCTCCCTGTCCTCTCTCAGCCCCTTCAGCTCTCTGTTCACCAAGCCTGCCTCCACCCTGCAGACGTTCAATGGCTCAGTATTAACCGCAGTGACCAACAAGAACCCAGGCAGCCTCCGCAGCCTGCTCAATGCAGAGCAGAGTGACAGTGGAAGTAAAGGAACCCCCAAACTCCTCGATGACCTCTTTGCATCAATTGTCCAAAGCAAAGCACCGAGTGTGTCCTCACCCAGAAGAACAGATGTCAGAGAGCCGATAATGAAACCTCTGGGCATGCTGTTCACCATTGTGGCCAGTACAGATGTGCCTCACTGCTGGCTGTGTGATGGGCGTCTGCTCTGCCTGCAGGACCCCACACACAAGAACAACTGGAACTTCTTCAGAGAGTGCTGGAAGCAGGGCCAGCCTGTGATGGTATCAGGAATGCACAAGGTCCTGAATGAAGCGCTGTGGAGGCCAGAGACGTTCAGCAAGGAGTTTGGAGATCAGGAGGTGGAGTTGGTGAATTGCCGCACCAGCACTGTCCTCCCCGCCACGGTGGGAGACTTCTGGAATGGCTTCGAGGACATCGCACGGCGAATGAAGACTCCAGAGGGGGAGCCCATGGTGCTGAAGCTGAAAGACTGGCCCCCAGGGGAGGATTTCAGAGACATGTTGCCCTCTCGCTTTGATGACCTCATGAAGAACATCCCTCTGCCAGAGTACACTAGACGAGATGGGCGGCTGAACTTGGCATCCAGGCTTCCAGAATTCTTTGTTCGGCCTGATTTGGGTCCAAAGATGTACAATGCTTATGGTCTGATAACCGATGAAGACCGGAAATACGGCACAACTAATCTTCATCTGGATGTGTCAGACGCGGCCAACGTCATGGTCTATGTGGGGATCCCTGAGGGAGAAAAGGAGCATGAAGCAGCCGTGCTGCAGACCATAGAGGATGGGGACGTGGACGAGCTGAGTGTCAAACGCTTCATTGAAGGGGGAGAGAAGCCTGGAGCGCTGTGGCACATTTACGCAGCCAAAGACACGGACAAGATCCGACAGCTGCTTTTGAAGGTGGCGGAGGAAAAGGGTGAGGAGAACCCAGTGGATCATGACCCGATTCATGACCAGAGTTGGTACCTGGACCGGCCGCTGCGCCGCCGCCTGCTGCAGGAGTATGGAGTGCAGGGCTGGCCCATCCTGCAGTTCCTGGGAGATGTGGTCTTCATTCCCGCAGGAGCACCACACCAgGTGCACAACCTCTACAGCTGTATCAAAGTGGCAGAAGACTTTGTTTCTCCAGAGCATGTGAAACATTGCTTCCGCCTCACTCAGGAATTCAGATACCTCTCAAACACTCACACCAACCACGAAGACAAACTGCAGGTAAAGAATGTGATCTACCATGCAGTGAAGGATTCGGTGGCGATACTGCAAGCCCACGATGTCATTAAGCCCTAATGAAACTGCACTATGGAATGTATTGCACTGAACTTCAGGCAGCTATGAGAGATATTGTTCAATCTCAAAATGaactcttttttttctgtcaggataatcatttgtttgtgtgctgaTGGTCAGTTCTCTGTAAAGATCAGCACAGCGTACGTTTCAGGAGTGAATTCCAAGATTTGTATTCTGCCTTTAAGTGCAACCACAATGTGCAGCACTATTAAGAATTTGACATATAAAGATGTGCAGGAGGGTATCCTACTGTGTATACTCTTACTGATATCTCTGTAAATCCATATTGAAGCATTGAAGTAAATTTGCTGACGTAGTTGAAACTGCATAACGATTCAAAGCTGAACTCGTCCCTGAAAGTTTTGTTAACTCAAGCCAGTTAGTTTCAAAAccgttatttaaaatgtagaatacatttttgtttaataaattttttttaaaaaatcagtGCACAGCCAAAACATTGTAAAGGATTACAGATTAAGATCAGAATGCGTTTGGATGAAAACATGTTCTTGTGCGCATTTTATTAGTTTCCCCAAAAATTGATACATGGAAGCACATTTTAGCCTAAGCTGATTAATAAAGATACTTCTGCTCTGTGCAGTGGAGGTCTGtcagcaaattacattttcgaTGGTGTAAAATAGATACCAAGAGGAAATCctgaaatgtatgcattgtaAGAATATGCGCAGATTGCatcttgtttaaatgttttgtgtacTACCACTGAGGCGATAACCACCTGAAGCATGCCAGGGAAACTACTCGTAAGAGCTGtgatttgtaaatatgtttttggttaaacttgttaaaataaaatatttatgttgacatgattttttttagttttgaacaTCTTATCAGTTCAGTAAGAGAAGTGATTACTTGTCGTAAGTCgaaattttattttgtaaatttgaaataaaattggGAAGGAATTTGAAACGCTGAATGGTTTATCTTTTGGTTATTGCCGTTAGTAATGGAATGGTTTGGACAATgacatacattttcttgtattttatttaatgtaggGTTAGTGTAATTTACAACATTGTAAATGTCCTTACTTTCTGAATCCTGTTTCTGTCATTGTGTAAGTAAGACTTGCAGGTTTTATTCAACAGTTTCTGTTGCAtaaagtatttaagtatttaataacTTCAGTATTAATTCTAGACACTTTGCGCAACTTTGGGATGTCTTATG

Function

GO: NA

KEGG:

id description
K15601 KDM3; [histone H3]-dimethyl-L-lysine9 demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115135 lncRNA downstream 6919 17713903 ~ 17714182 (-) True G92313
TU115017 lncRNA downstream 326052 17388627 ~ 17395049 (-) False AMCG00017663
TU115016 lncRNA downstream 326380 17388627 ~ 17394721 (-) False AMCG00017663
TU114993 lncRNA downstream 468471 17252430 ~ 17252630 (-) True G92200
TU114975 lncRNA downstream 559456 17161245 ~ 17161645 (-) True G92183
TU115166 lncRNA upstream 47069 17781648 ~ 17789734 (-) True AMCG00017675
TU115216 lncRNA upstream 119348 17853927 ~ 17855416 (-) True G92375
TU115229 lncRNA upstream 155763 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 370410 18104989 ~ 18105268 (-) True G92401
TU115281 lncRNA upstream 653226 18387805 ~ 18452812 (-) True G92428
AMCG00017677 mRNA downstream 23661 17683162 ~ 17697440 (-) True AMCG00017677
AMCG00017669 mRNA downstream 56316 17620902 ~ 17664785 (-) True AMCG00017669
AMCG00017672 mRNA downstream 121408 17588881 ~ 17599693 (-) True AMCG00017672
AMCG00017671 mRNA downstream 145329 17558444 ~ 17575772 (-) True AMCG00017671
AMCG00017670 mRNA downstream 189773 17514883 ~ 17531328 (-) True AMCG00017670
AMCG00017675 mRNA upstream 52355 17786934 ~ 17789749 (-) False AMCG00017675
AMCG00017680 mRNA upstream 90479 17825058 ~ 17833817 (-) True AMCG00017680
AMCG00017684 mRNA upstream 193854 17928433 ~ 17942165 (-) True AMCG00017684
AMCG00017688 mRNA upstream 439572 18174151 ~ 18177011 (-) True AMCG00017688
AMCG00017686 mRNA upstream 446986 18181565 ~ 18189353 (-) True AMCG00017686
TU115048 other downstream 246762 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 1690196 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1690196 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1853454 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 3241314 14433158 ~ 14479787 (-) True AMCG00017631
TU115289 other upstream 728205 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1678408 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1683622 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5583547 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5583547 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile