RNA id: AMCG00017677


Basic Information

Item Value
RNA id AMCG00017677
length 1946
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00017677
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17683162 ~ 17697440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACGAGGTAGAGAAGGATGGAGAAAGGGAAAAGGCGCGACACCGAGGCGTCATGGATCAGTGTGTAAACGTGGAGAGGGAGCTGGAGAAAGTGCTGCAGAAATTCTCCATCTACGGACAGCACTGCGATAGGACGCTGGAGGAGCTGATCGAGTACACCAGTGGGCTGAAACACGAAATAATACAGACTGGCGATCAAGAAGTGGAGTTATCAGGAACCCTGTCTCTGGTCCTGTCACAGTGCTGTAAGAGGATAAAAGACACCGTGCAGAAACTGGCCTCAGACCACAAGGACATCCACAGCAGTGTGTCTCGAGTAGGAAAAGCCATCGATAAGAATTTCGACTCGGATATCAGCAGCGTGGGCATCGAGGGCTGCTGGCAGGCCGAGAGCCAGAGGATCCTCAGTGAAGTCATGGTGGAGCACTTCTTCAGGCAAGGCATGCTGGATGTGGCAGAGGAACTGTGTCAGGAAGCTGGACTTTGCATTGACCCAAGTCAAAAGGAACCTTTTGTAGAATTAAACAGAATACTAGAAGCACTTAAACTCAGAGATTTAAGACCTGCATTAGAGTGGGCGATCGAGAACCGGGAGATGCTCATGGCACAGAACAGCTCGTTAGAATTCAAGTTGCACAGGCTGTATTTCATCAGCTTGTTAATGGGAGGCACCGCCAATCAGAAAGAAGCCCTGCAGTATGCAAAAAACTTTCAGCCTTTTGCTGTGAACCACCAgaaagACATCCAGGTGTTGATGGGCAGTTTAGTGTACTTGCGTCAGGGCATTGAGAATTCGCCATACGTTCACTTGCTGGATTCCAACCAGTGGGCGGATATCTGTGACATCTTCACCAGGGATGCCTGCTGCTTGCTCGGCCTCTCTGTGGATTCGCCTCTGAGTGTCAGTTTTTCAGCAGGCTGTGTGGCACTGCCAGCTCTCATTAACATTAAGGCCGTCATCGAGCAGAGACAGTGCACAGGGGTGTGGAACCAGAAAGATGAGTTGCCTATTGAGGTTGACTTGGGTAAGAAATGCTGGTACCACTCGGTGTTTGCCTGTCCCATCCTTCGACAACAAACCACAGATAATAATCCTCCCATGAAGCTGGTCTGTGGACACATCATTTCCAGAGATGCTCTAAACAAAATGATCAATGGAAGCAAGTTGAAATGTCCCTACTGTCCCATGGAACAGGTACCAGGAGAGGCAAAGCAAatctacttttaaaatgtggccTCAAATCAATGCCTACCAGAGGAGCCTCAGGAGTCAAAGTTCTGCTGGCGATGAACTTGAAAGAGACAAATACCTGGGCTTCATAGGGGATGAAGAGTATTTGTAGCTGTATGTGCAAGGACGCCAATATGTAGAAACACTGACCGTTCAAGAGCTAGAGAGGGACTTGGGGACAATATACGGCTTTTTCTTAGTCTGAAATAACCTGGTCAACCTAACACACCAGCACTATCAACTATTAACAGCAGTTATTTATTCGTTTAActattcattttccttttttaaggttttttccccctccccatAACCAGGtgagctttttgttttgcattcttaGTGCATCATCATATTGATCGATTTTTGTATGTCATTTTTTGAGGATGTGGGTGTGGAATGATTGTTTTGAATTTTCTTTtctcaaaaatgtatataatatttagaAGATATAATGGATATGTAGCAACTTCTGCTGCAGAGGTTTGCATTACTATTTTCCAGTGATGGCAAGCTGTGAAATacttctttaaacaaaatgtacagatctAAGTGAATTGGAGCCCCTGGGCCTTAGATATTTAAGTGTATTGCTAATTTATATGATTGTATGCAGTTTATATTATTGGAGAAGAGTGGCACGTAATGTTTCTTTGCTTTGATAacttaataatgttttttgtgtaatgCCATCTCTATTAAAGATATACTTT

Function

GO: NA

KEGG:

id description
K23333 RMND5; E3 ubiquitin-protein transferase RMND5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115017 lncRNA downstream 288113 17388627 ~ 17395049 (-) False AMCG00017663
TU115016 lncRNA downstream 288441 17388627 ~ 17394721 (-) False AMCG00017663
TU114993 lncRNA downstream 430532 17252430 ~ 17252630 (-) True G92200
TU114975 lncRNA downstream 521517 17161245 ~ 17161645 (-) True G92183
TU114971 lncRNA downstream 685658 16997220 ~ 16997504 (-) True G92179
TU115135 lncRNA upstream 16463 17713903 ~ 17714182 (-) True G92313
TU115166 lncRNA upstream 84208 17781648 ~ 17789734 (-) True AMCG00017675
TU115216 lncRNA upstream 156487 17853927 ~ 17855416 (-) True G92375
TU115229 lncRNA upstream 192902 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 407549 18104989 ~ 18105268 (-) True G92401
AMCG00017669 mRNA downstream 18377 17620902 ~ 17664785 (-) True AMCG00017669
AMCG00017672 mRNA downstream 83469 17588881 ~ 17599693 (-) True AMCG00017672
AMCG00017671 mRNA downstream 107390 17558444 ~ 17575772 (-) True AMCG00017671
AMCG00017670 mRNA downstream 151834 17514883 ~ 17531328 (-) True AMCG00017670
AMCG00017665 mRNA downstream 195665 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017676 mRNA upstream 23661 17721101 ~ 17734579 (-) True AMCG00017676
AMCG00017675 mRNA upstream 89494 17786934 ~ 17789749 (-) False AMCG00017675
AMCG00017680 mRNA upstream 127618 17825058 ~ 17833817 (-) True AMCG00017680
AMCG00017684 mRNA upstream 230993 17928433 ~ 17942165 (-) True AMCG00017684
AMCG00017688 mRNA upstream 476711 18174151 ~ 18177011 (-) True AMCG00017688
TU115048 other downstream 208823 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 1652257 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1652257 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1815515 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 3203375 14433158 ~ 14479787 (-) True AMCG00017631
TU115289 other upstream 765344 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1715547 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1720761 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5620686 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5620686 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile