RNA id: AMCG00017688


Basic Information

Item Value
RNA id AMCG00017688
length 744
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00017688
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18174151 ~ 18177011 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgcattacAAGTGTTGGATTGTTATTAATCTCTTCCTTGTCTTTATCATCCTCCATGTTCTTTGACTTAGGAGAAAGGGAGGAAAAGTGCATAATAGAAGACATTCCACAAGACACCTTGGTTACAGGGATTTTTAAAATGGAGAACTGGGATGTCAGgaatcaaaactttaaaagtGACCTTGGCCTGACAGTTACAGTCAGAGATCCAAACTACCAGactgTGATGACTAAGAAATATGGCCAGAAAGGAAAATTCACATTTACTTCACCTACTTCAGGCCAACATTTTatctgtttaaaatcaaattccACAAGGCTTTCTGTATTTGCTGGAGACAAGATGAAACTCCATTTGGATGTTCAGTTCGGAGAGCACACACTGGACCAATCCACCATAAAAACCAAAGACACAGTCAAAGGTGTAGAATACAGAATAATGCATCTGATTCAGGAGATTCGGCAGATCAGTAAGGAGCAGAACTACCAGAGGGTAAGTACTGTGCGTTTTAAAACAGGGGTAGGTATGCAGAACAAAACCTTAATGAATGATCAATTTTTTAAGTGCACTTATGTCTTGTTCTTTATACAGGAACGCGAGGAGACCTTCAGGCAAACAAGTGAAGACACGAATACTAAGGTTTTATGGTGGGCTGCCTTGCAGACCACAATACTCCTCACCATGGGAGTCTGGCAAATGAAGCAAATGAAGGCATTCCTCATTGAAAAAAAGCTTGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115247 lncRNA downstream 68883 18104989 ~ 18105268 (-) True G92401
TU115229 lncRNA downstream 283081 17890342 ~ 17891070 (-) True G92386
TU115216 lncRNA downstream 318735 17853927 ~ 17855416 (-) True G92375
TU115166 lncRNA downstream 384417 17781648 ~ 17789734 (-) True AMCG00017675
TU115135 lncRNA downstream 459969 17713903 ~ 17714182 (-) True G92313
TU115281 lncRNA upstream 210794 18387805 ~ 18452812 (-) True G92428
TU115287 lncRNA upstream 282558 18459569 ~ 18459816 (-) True G92434
TU115288 lncRNA upstream 284357 18461368 ~ 18461702 (-) True G92435
TU115293 lncRNA upstream 304760 18481771 ~ 18482074 (-) True G92440
TU115294 lncRNA upstream 306462 18483473 ~ 18483792 (-) True G92441
AMCG00017684 mRNA downstream 231986 17928433 ~ 17942165 (-) True AMCG00017684
AMCG00017680 mRNA downstream 340334 17825058 ~ 17833817 (-) True AMCG00017680
AMCG00017675 mRNA downstream 384402 17786934 ~ 17789749 (-) False AMCG00017675
AMCG00017676 mRNA downstream 439572 17721101 ~ 17734579 (-) True AMCG00017676
AMCG00017677 mRNA downstream 476711 17683162 ~ 17697440 (-) True AMCG00017677
AMCG00017686 mRNA upstream 4554 18181565 ~ 18189353 (-) True AMCG00017686
AMCG00017687 mRNA upstream 55397 18232408 ~ 18268748 (-) True AMCG00017687
AMCG00017694 mRNA upstream 321118 18498129 ~ 18501874 (-) True AMCG00017694
AMCG00017695 mRNA upstream 550688 18727699 ~ 18737258 (-) True AMCG00017695
AMCG00017699 mRNA upstream 605719 18782730 ~ 18790340 (-) True AMCG00017699
TU115048 other downstream 699812 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 2143246 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 2143246 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 2306504 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 3694364 14433158 ~ 14479787 (-) True AMCG00017631
TU115289 other upstream 285773 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1235976 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1241190 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5141115 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5141115 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile