Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00017692 |
| length | 1323 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 6 |
| gene id | AMCG00017692 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 18460767 ~ 18463947 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0009411 | response to UV | biological_process |
| GO:0006283 | transcription-coupled nucleotide-excision repair | biological_process |
| GO:0044427 | obsolete chromosomal part | cellular_component |
| GO:0000993 | RNA polymerase II complex binding | molecular_function |
| id | description |
|---|---|
| K23720 | UVSSA; UV-stimulated scaffold protein A |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU115260 | lncRNA | upstream | 218930 | 18231361 ~ 18241837 (+) | True | G92412 |
| TU115246 | lncRNA | upstream | 355499 | 18104989 ~ 18105268 (+) | True | G92400 |
| TU115144 | lncRNA | upstream | 726181 | 17734020 ~ 17734586 (+) | True | G92322 |
| TU115142 | lncRNA | upstream | 729515 | 17730880 ~ 17731252 (+) | True | G92320 |
| TU115140 | lncRNA | upstream | 731692 | 17728869 ~ 17729075 (+) | True | G92318 |
| TU115305 | lncRNA | downstream | 238829 | 18702776 ~ 18706251 (+) | True | G92449 |
| TU115323 | lncRNA | downstream | 298444 | 18762391 ~ 18763664 (+) | True | G92463 |
| TU115338 | lncRNA | downstream | 340365 | 18804312 ~ 18805055 (+) | True | G92475 |
| TU115368 | lncRNA | downstream | 393999 | 18857946 ~ 18858230 (+) | True | G92502 |
| TU115409 | lncRNA | downstream | 537793 | 19001740 ~ 19004537 (+) | True | G92536 |
| AMCG00017691 | mRNA | upstream | 7963 | 18444938 ~ 18452804 (+) | True | AMCG00017691 |
| AMCG00017690 | mRNA | upstream | 38356 | 18417215 ~ 18422411 (+) | True | AMCG00017690 |
| AMCG00017685 | mRNA | upstream | 394062 | 18062698 ~ 18066705 (+) | True | AMCG00017685 |
| AMCG00017689 | mRNA | upstream | 438348 | 18020900 ~ 18022419 (+) | True | AMCG00017689 |
| AMCG00017682 | mRNA | upstream | 544013 | 17904410 ~ 17916754 (+) | True | AMCG00017682 |
| AMCG00017693 | mRNA | downstream | 19524 | 18483471 ~ 18491550 (+) | True | AMCG00017693 |
| AMCG00017706 | mRNA | downstream | 432539 | 18896486 ~ 18907295 (+) | True | AMCG00017706 |
| AMCG00017705 | mRNA | downstream | 505649 | 18969596 ~ 18996932 (+) | True | AMCG00017705 |
| AMCG00017708 | mRNA | downstream | 888941 | 19352888 ~ 19363242 (+) | True | AMCG00017708 |
| AMCG00017710 | mRNA | downstream | 938160 | 19402107 ~ 19433103 (+) | True | AMCG00017710 |
| TU115097 | other | upstream | 854559 | 17601535 ~ 17606208 (+) | False | AMCG00017668 |
| TU114914 | other | upstream | 2325451 | 16135025 ~ 16135316 (+) | True | G92130 |
| TU114906 | other | upstream | 2593133 | 15867031 ~ 15867634 (+) | True | G92123 |
| TU114828 | other | upstream | 3344736 | 15112610 ~ 15116031 (+) | False | AMCG00017650 |
| TU114814 | other | upstream | 3376489 | 15077325 ~ 15084278 (+) | True | G92046 |
| TU115411 | other | downstream | 609291 | 19073238 ~ 19073662 (+) | True | G92538 |
| TU115469 | other | downstream | 938139 | 19402086 ~ 19411990 (+) | False | AMCG00017710 |
| TU115496 | other | downstream | 957363 | 19421310 ~ 19423679 (+) | False | AMCG00017710 |
| TU115510 | other | downstream | 980225 | 19444172 ~ 19528293 (+) | True | AMCG00017712 |
| TU115788 | other | downstream | 2335648 | 20799595 ~ 20815546 (+) | False | AMCG00017747 |
