RNA id: AMCG00017695


Basic Information

Item Value
RNA id AMCG00017695
length 1158
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00017695
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18727699 ~ 18737258 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTGTTGGTGTGAGCAGCGAAAAGGGGACTACAATGGTAACACTAATAACCGAGAAGCTGCAGAACCAGAGCTTGAACGACCTGCCATGTAAAGCATACAGCATTAACCTGCACTCCTCTGAAAAGCTGAACCAGAGTGGCAGCCTGTTCCCTTACGAAATCGATGAAGAGAGTCCATGGAGAGTTATAAGTAGGGGCTGCCCTATAAGGACAGAGGCGACGACCAAGAATGCACCTTTCTATTTTCCTGTGTGCCCCTTCAGCCATGGTGCTGCTGACAGCGTTGGACTGCAGTGGCAGCGCGAGGTGGTGGGCATCCGGACCTGCAGCAGCGCCTTTGGGATTCCCATCGGTAGCCGGCCCGGCAGTGTTTGTGGTGGTAGTGCTTCGGTGCTCCCAGGCTGGATCAGCGAACTGAATCTGAATGAACACTGTGGGCAGCCACTGGCCCCCCCCACCAAGCGCCACTGCCGCTCCCTGTCCGAGCCGGACGAGCTGGCACGCTGTCGCTCCCCGTGGAAACCGGGCAGCGGCTCCAAAGTGTGGACTCCCGTCTCCAAGAGGCGCTGCAACAGTGGTGGCAGTGCCACCCTGCAACGCTGCAACAGCCATGGCAGTGCCACCCTGCAGCGCAGCACCAGCGCCAGTCTGCCCCAACCTTCGTCCTCCacctgctcctcctccagcagctgcagcagcggCGGTGGCAGCAAACACATCCTCTCCCTGAACAATAGCGCCTTCAGCGTCACCAGCAGCAGCTTCAACACCTCGCCCGTGCCCCGACCCTCCTCCGCCAGCAGCGGCTTTGTGGACAGCAGCGAGGGCAGCACGGCATCCTCTGGTATCCGCTGGCACTCAGGGGGGCCTTACGACTACCATCCCCGCCGCCGACTCTCCCTGTCGCAGGAGCATATCACCGACACGGGGAACCTGTTGCCGTCGGCCAACAGCACTCCCACCTCCACCCCAGAGCTCAGCCGGCGGCAGGGCCTCCTGCGCTGCCGCTCCCAGCCCTGTGTGCTCAACGAGCGGAAAAGTGGCCTGAAGCGGCGGCGGGAGGAGGACGTGCGATGGAACCGGccctctctggatttcctcaaaATGACACGGGTAAGGGAAAGGGAACGGAGGTGTGCTTTAGGTTTTGCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115297 lncRNA downstream 234469 18492538 ~ 18493230 (-) True G92444
TU115296 lncRNA downstream 237606 18489551 ~ 18490093 (-) True G92443
TU115295 lncRNA downstream 241695 18485267 ~ 18486004 (-) True G92442
TU115294 lncRNA downstream 243907 18483473 ~ 18483792 (-) True G92441
TU115293 lncRNA downstream 245625 18481771 ~ 18482074 (-) True G92440
TU115324 lncRNA upstream 25839 18763097 ~ 18763661 (-) True G92464
TU115365 lncRNA upstream 112804 18850062 ~ 18850628 (-) True G92499
TU115412 lncRNA upstream 335980 19073238 ~ 19073865 (-) True G92539
TU115414 lncRNA upstream 388802 19126060 ~ 19126349 (-) True G92541
TU115513 lncRNA upstream 875447 19612705 ~ 19613182 (-) True G92608
AMCG00017694 mRNA downstream 225825 18498129 ~ 18501874 (-) True AMCG00017694
AMCG00017687 mRNA downstream 458951 18232408 ~ 18268748 (-) True AMCG00017687
AMCG00017686 mRNA downstream 538346 18181565 ~ 18189353 (-) True AMCG00017686
AMCG00017688 mRNA downstream 550688 18174151 ~ 18177011 (-) True AMCG00017688
AMCG00017684 mRNA downstream 785534 17928433 ~ 17942165 (-) True AMCG00017684
AMCG00017699 mRNA upstream 45472 18782730 ~ 18790340 (-) True AMCG00017699
AMCG00017698 mRNA upstream 63741 18800999 ~ 18807177 (-) True AMCG00017698
AMCG00017697 mRNA upstream 86142 18823400 ~ 18828559 (-) True AMCG00017697
AMCG00017696 mRNA upstream 106632 18843890 ~ 18849241 (-) True AMCG00017696
AMCG00017703 mRNA upstream 128498 18865756 ~ 18878190 (-) True AMCG00017703
TU115289 other downstream 264523 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1253360 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 2696794 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 2696794 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 2860052 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 675729 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 680943 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4580868 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4580868 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4580868 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile