Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00017696 |
| length | 1369 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 2 |
| gene id | AMCG00017696 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 18843890 ~ 18849241 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K24897 | HOPX; homeodomain-only protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU115324 | lncRNA | downstream | 80229 | 18763097 ~ 18763661 (-) | True | G92464 |
| TU115297 | lncRNA | downstream | 350660 | 18492538 ~ 18493230 (-) | True | G92444 |
| TU115296 | lncRNA | downstream | 353797 | 18489551 ~ 18490093 (-) | True | G92443 |
| TU115295 | lncRNA | downstream | 357886 | 18485267 ~ 18486004 (-) | True | G92442 |
| TU115294 | lncRNA | downstream | 360098 | 18483473 ~ 18483792 (-) | True | G92441 |
| TU115365 | lncRNA | upstream | 821 | 18850062 ~ 18850628 (-) | True | G92499 |
| TU115412 | lncRNA | upstream | 223997 | 19073238 ~ 19073865 (-) | True | G92539 |
| TU115414 | lncRNA | upstream | 276819 | 19126060 ~ 19126349 (-) | True | G92541 |
| TU115513 | lncRNA | upstream | 763464 | 19612705 ~ 19613182 (-) | True | G92608 |
| TU115514 | lncRNA | upstream | 764000 | 19613241 ~ 19617787 (-) | True | G92609 |
| AMCG00017697 | mRNA | downstream | 15331 | 18823400 ~ 18828559 (-) | True | AMCG00017697 |
| AMCG00017698 | mRNA | downstream | 36713 | 18800999 ~ 18807177 (-) | True | AMCG00017698 |
| AMCG00017699 | mRNA | downstream | 53550 | 18782730 ~ 18790340 (-) | True | AMCG00017699 |
| AMCG00017695 | mRNA | downstream | 106632 | 18727699 ~ 18737258 (-) | True | AMCG00017695 |
| AMCG00017694 | mRNA | downstream | 342016 | 18498129 ~ 18501874 (-) | True | AMCG00017694 |
| AMCG00017703 | mRNA | upstream | 16515 | 18865756 ~ 18878190 (-) | True | AMCG00017703 |
| AMCG00017704 | mRNA | upstream | 28981 | 18878222 ~ 18889526 (-) | True | AMCG00017704 |
| AMCG00017702 | mRNA | upstream | 40980 | 18890221 ~ 18896507 (-) | True | AMCG00017702 |
| AMCG00017700 | mRNA | upstream | 58022 | 18907263 ~ 18911871 (-) | True | AMCG00017700 |
| AMCG00017701 | mRNA | upstream | 63924 | 18913165 ~ 18924436 (-) | True | AMCG00017701 |
| TU115289 | other | downstream | 380714 | 18462784 ~ 18463176 (-) | True | G92436 |
| TU115048 | other | downstream | 1369551 | 17468605 ~ 17474339 (-) | False | AMCG00017665 |
| TU114913 | other | downstream | 2812985 | 16030402 ~ 16030905 (-) | True | G92129 |
| TU114912 | other | downstream | 2812985 | 16030456 ~ 16030905 (-) | False | G92129 |
| TU114907 | other | downstream | 2976243 | 15866947 ~ 15867647 (-) | True | G92124 |
| TU115494 | other | upstream | 563746 | 19412987 ~ 19419356 (-) | False | G92591 |
| TU115492 | other | upstream | 568960 | 19418201 ~ 19419356 (-) | True | G92591 |
| TU116215 | other | upstream | 4468885 | 23318126 ~ 23321954 (-) | True | AMCG00017780 |
| TU116216 | other | upstream | 4468885 | 23318126 ~ 23321954 (-) | False | AMCG00017780 |
| TU116217 | other | upstream | 4468885 | 23318126 ~ 23321954 (-) | False | AMCG00017780 |
