RNA id: AMCG00017698


Basic Information

Item Value
RNA id AMCG00017698
length 3095
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00017698
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18800999 ~ 18807177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaataaaatcaggcaTAGGCCTCCCCCTTCTGTCATGTGACGTGTTGGTATTGTCCAAACGCCAGCGTCTCCTTGGCGCGTTGTATTAAAATTGTTTCTCGGAGGAAATTCGTCTCACTTTCCGCGTAAGGAGACCTGCGAGCCGTGTGTGCTTCCTTGACGtgtcaaataaaacatatatacaattaaaatgtcttttagAAACAGTCTGAGACATCAGGAACAACGGACATCGGACGATAGTCGCAGGAAGGGCCCTTCGCGCTGGTCGCACTGCAGGAAGCGGGGCGCGGACGGCAGCTTGAGGCCGCATGATGCCGACCCATCCGTGCTCGACGATGGGGACCGAGACCAGCCCCGGCACGCTGACAGCAGGCCGGCCAGCTTCACTACACCTGAGAGTGACGGTCCATTGCCCAGGTGTGCAGACTGGGGAAGCGAGGTGGAGAAGGATGAGTTGCGGACAGATGTCAGAAGGGACATGCAGAGATACAGGAGAAGAATCTTGGTGAATGACTTCAgtgaaagggaaagaaaaacttCTTCGGGAAGCTCCGATTCAAGAGATTCCCCTATACCTACAGAAATGGAAACTGATGAAGCGGTGCTGATGAGAAGACAGAAGCAGATAAATTATGGGAAAAACACGATTGCTTATGACAGATATATTCGGGAAGTGCCCAAGCACCTTCGACAACCAGGAGTGCACCCTAGGACTCCCAACAAATTCAAGAAGTACAGCCGCAGGTCATGGGACCAACAGATCAAGCTGTGGCGAGTGAAACTGCATGCATGGGATCCACCAGCACAGGAAGGCAGCGATTTGCAGGCCATtGAAGAGATTGACCTCGATGATATAATGGAGACAGAGTCTGGGGCCAGTAGTTCAACAGAATCGGGGACAAGTTCCCACTACTTGAAAGCAGTTAAAGCTCCTTCATCAACACCTGAGgACTCCTGTTCTGGAACTCCAAATAAAGTAATGAGAATTGGATCTGAAATAGAAGGAAGTTTTGACTTGGAGGCGTGTTTGAATGAAGTTAAGGAAAACGGCAACTGGTTAACTTCATAATGGATGGGCTCTTTGTGCTCTTTCTGAAAAAATGCATGGGAGAAGCTGGATCCTCAAGATTTCAGTAACTGAGAATTTGGTCACAAAACAATTCTGCAGCCGGTGCAGTAGATTGGGATTGGTCATGGTGCAAGGATTTTAAGCCACGGTGTGACCTCTCGAACTCAAATGGATTGTGGACATCCCATGCACTGTGCATAGTTCTGATTCTTCTGGCGATCTTTGTTCTTTGGCCCCCATGCTGGGGTAGACTGACATTCAACACTTAAATCCAGTCATGACTATCAAAGTCCTTTGTGttcaaaaactatttttttaatgcaactttgttttgtttggttagtttgtatttttgtgtgtacatttatgtaaatcctttttattgtacatttttcataGATGCAGTAGACATCTCAGCCAAACTACTCCAGGGATTTAGTGTCGTAACTAGGGTATAATATTTAGGCTACTAGTTGTCCAGGTGAATATCTCCTGCATACttaatttgaagtattttaacaaaattaagCCAAAACATGGACTTTCATCCATAATACCCAGCACTTGATCTGTCTGGTGTTTATTCATGTAGATTAATAACCACACATACAAGACTCCTATAGGTATCTGAACTCATGACTGTTTTCAGAGCCATATAGTCTAGGATTAGTGCTTTCTGTTTGTGAAATCAGTAAAGTAAAGTATCAGTTAAGACTTCAGTCCAGTGCTGAGTttcaagatttttgtttttggaccCCCTCAATCGCAGATAGTATTTgcaaaagtgttattttaaggaggttaaatttcatttttaaccAGCAGCTTTTCAGGTTTTAATAAATGCACTGACTTTCACCGTTTTTATGAATGAATCCACAACAATTAAAAGATACTCTTAAACACAATAGGTGTTGATGAGTGGATTGTTCATTAGACTGGTTATATCTTTCTTCCCTTAATGTATATCATGGAAGGGAGATGCCTTTATTACTACCATAGTGTTGGCtgtttaattattgttcttTGTGTATAATGGCTTGTTAATGTGCCCACACCTTTTGGTAGAACACAAGTTATACTTTAGGTAATGTTTGCTGAGAtataaattgtatgtaaattcaattaaaaacagttatAACACAGAGCTTTATATACCTGGATAAAGTGTTACTCCACAGCCagcattatttcttttttcttctgtactttattttaaataagaaatttGAATGTGGttcctattttcattttaatggtcttgtaaatttaacattttgctTAATATGGGGTTAATCTTtgacattgaaaataaagaaaaaaatgacttgTTTACATCACTGAATTTGACATTAAATGGCTTCCAGCACCTATACTGAATCTCTGTGCAGCAGGGGTCTCCAGTCCTTATCCTGGATAGCTACAGTAGCCTACAGAACGTGTAGATAGGATAACATAGATGGATAACAAAACGGGTACACACTCCCAACACCAAATGTAACTGAACCTCAGGCACATCACACTGGTTGTCCCTACACAACGTTGCACCTTGTATCCCAAAACACTTTTTGGCTATTCCCTATTGTAACATGTATtctactgtgctgtactgttacTAGAGCCTCCTGTTGTGTAACTGCTCCCTATTATAACAACAGCGTTCCACTATACTGACAATTGGACACGACAATGACATGGATGCATTTGACTGACCCTTACAgcacttttaatttattaaatgggAAATGACACTGGTCACTTATGACACCTTTTGGCCATGTATGACAATTGTAATCTGTACTGCACTTTGTATAACATATTGAGTCATTTATATATCGAATGGTTTATGATGTTAAAAAATGGCTTATGTTTTAGGGACTGGATGTTActatataaatagtaaatgcaattaaaagcaaggcagaaatgtttattttttaattcagtttttgtgGTATGTCCCAAAAAATAGACACTGCAAAATACCAGAACAGGGTTGGTCCTCAATTCTAAATTTGTC

Function

GO: NA

KEGG:

id description
K18710 SLBP; histone RNA hairpin-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115324 lncRNA downstream 37338 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 307769 18492538 ~ 18493230 (-) True G92444
TU115296 lncRNA downstream 310906 18489551 ~ 18490093 (-) True G92443
TU115295 lncRNA downstream 314995 18485267 ~ 18486004 (-) True G92442
TU115294 lncRNA downstream 317207 18483473 ~ 18483792 (-) True G92441
TU115365 lncRNA upstream 42885 18850062 ~ 18850628 (-) True G92499
TU115412 lncRNA upstream 266061 19073238 ~ 19073865 (-) True G92539
TU115414 lncRNA upstream 318883 19126060 ~ 19126349 (-) True G92541
TU115513 lncRNA upstream 805528 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 806064 19613241 ~ 19617787 (-) True G92609
AMCG00017699 mRNA downstream 10659 18782730 ~ 18790340 (-) True AMCG00017699
AMCG00017695 mRNA downstream 63741 18727699 ~ 18737258 (-) True AMCG00017695
AMCG00017694 mRNA downstream 299125 18498129 ~ 18501874 (-) True AMCG00017694
AMCG00017687 mRNA downstream 532251 18232408 ~ 18268748 (-) True AMCG00017687
AMCG00017686 mRNA downstream 611646 18181565 ~ 18189353 (-) True AMCG00017686
AMCG00017697 mRNA upstream 16223 18823400 ~ 18828559 (-) True AMCG00017697
AMCG00017696 mRNA upstream 36713 18843890 ~ 18849241 (-) True AMCG00017696
AMCG00017703 mRNA upstream 58579 18865756 ~ 18878190 (-) True AMCG00017703
AMCG00017704 mRNA upstream 71045 18878222 ~ 18889526 (-) True AMCG00017704
AMCG00017702 mRNA upstream 83044 18890221 ~ 18896507 (-) True AMCG00017702
TU115289 other downstream 337823 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1326660 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 2770094 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 2770094 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 2933352 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 605810 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 611024 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4510949 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4510949 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4510949 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile