RNA id: AMCG00017700


Basic Information

Item Value
RNA id AMCG00017700
length 2994
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00017700
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18907263 ~ 18911871 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCAACATGCGCCAGGAGCTCAGGGAATCGTCTGTTCTCTCTGTAAAGACACATCCAACTtataatcaaatatttgtttgaattgTTCCTAACTGCTTATCTGCGTCATGACGTGTACGCCGCACACCTTGATGAACACATCAGTGACATACCACGTCAATCCTTGGAACTAATAAAGCTAATACAACAGTTGCAAGTAGCACTGACAGTTGTTAGAGGGTTGTTTCATTGGATATTGTACAATCTGAATTGTACTTCTGGATCCAAGTCCACAAATAAACGGAAGTACACAGGGCAGTGTTTCCAGTTGATCATGGACTCTGTTACTGGTCCAGAAGATgtgccagcagcagcagacgcCCCTTCTCCAAATGAAGGCGGTCAGGAGAGCACGAAGAGCATGCCACTGTCCGCAGCCACCAGAGCTAAGATTGAGCGCAACAGACAGCGGGCTCTCATGTTGAGACAAGCCAGGGTTGCCAGCAGGCCATATTCTTCAGGAGAAGGTGGAACCTGTGCCAAGATTCCCAAAACCATTGACTCAGGTGGAGGCTTCTTcattgaggaggaggaggaggaggaggagcacaAAACGAAGGATGTTGTACACCGGCCAGGCCCAGTGGTTGAGTTTGACTACCTGATGTGTGAAGAATGCGATAAAGCCTTCATGGACTCCTACCTCAGCAATAGTTTTGACTTGTCCGTTTGTGACAACTGCAGGGACAGCGAAAGCAAGCACAAGCTAATAACCCGCTCCGAGGCCAAGAACGAATACCTGCTGAAGGACTGCGACCTGGACAAGCGGGAGCCCATGCTGAGATACGTGCTGAAGAAGAACCCGCACAACCCACGATGGGGGGACATGAAACTGTACCTCAGGCTCCAGGTGGTGAAGCGCTCTCTGGAGGTGTGGGGCAGCGAGGAAGCCCTGGAGGAGGCCAGAGAAGAGCGGGTGGGGAACAGGGAGAAACTAAAGCAGAAGCGGTTCGACAAGAAAGTGAAAGAGCTACGGCGCACAGTGAGGAGCAGCATGTGGAAGAGAGACTCCAGCGCCCACCAGCACAGCTACGGACCAGAGGAAGCACTGGATGACGACGATAACTACAGGAAGATCTGCAGCACCTGTGGCCACGAGTTGACTTATGAGAAAATGTGAACTTTGTCTATGGATCAAATGGAGCAGCGTTCTTACATCATTCCAGAGCCATTATCCCAAGAGTTGCCTGGAGAAAGGATTTCTTGGTAGAATTCAAATCAATAAGACGTTATTTATTGGAACTGTGTGTATCATGTCATGGTGCTGAAACCGGTGTAccttacatttttgtatatgtgtgaATTTCTATATAAACCTCCTCAGTGGGCTGGGGACAGATTAATGCTCTTTGGAGATGTTGGCTGGTTTATGAAGAAATACATCTTTCTTAAGCATGTATTGAATTGTCTTGGAATGAAATGAATTGTTACACAAAGAAAGGTTTCTGGAATTCAAAATATACCGCCAAGACAGATTGTGATAGCATTAGTGACAGCTTTCAAGTACAAACGTgacaggactttttttttttgtagtcatATTTTAGGCATGTATAGCATTATATATAGACCCCTCAGATGAAGCATGTCACAGTGAATTAACCCCTTCACTGTGTTTGTCACTGGCTAAATCATGATGTAGAATGAGTAATAGGCAGGTGTCACTATACCTTTGAGTAAATGAAATAGTGGgtgtatattgtaaataaatatagtaatgTTTGTGAATTTGTACTGTAAATCCTCAGATTTTagaaaagctgtttttgttttattaatctctCGATACTATTACAAATTAACCTCAGGATAAACACTTACAAATttctacaaaacatttaaaccacTGTAATGGTTTTCTGCAAATTTACAACTATCAATATTGTATGGCTGGGGCAACTGAGAGCTGAAGCCAAACTGCAGCTTTAAACTGTCACTGTAGAGCTGCAATGGGATTCAGAGATTAATTTATGCAagtgctttaataaaaaaaactgccttTATGATCTTACTTGCTGAAGTTGAATTTGATTCCTTCCTTAGCTGCAGACTGGTTCATTTGATTGTTTATAGTTTGCAGTTAACTGACTGGAAAGATAACTGCAATCTTACTTTTGAGCCACAGCCAATCTTACAAAATGATCCAATGGTAACCAGAAATGTAAGCCCTCCTTTGTAACCTCTCTTATTCAAATCTAGGATGAGGGCAGCCCTTCCTACTCAATCCAGTTTGATTTGTACTGAATTGGTATTGCAAATAATGAGATAAAAACTCTACTTGGGCCTGGGACTTACAGTGTGTATatgaaatcaaaaatgttaCGAAACACTCATAGGGGAaaatttctttttaatttgaaccACTGTCTGATGATACCCATGGtttcaaaatctaaaaaaaatgaagtCAAAGACaccattatataaaaaaacaggaacagatTCCAGTGTATTTCAACATCAATTCACACAGAATCATCTCCCTTCCACTGACCTGGCAAGTCATACAAACCTGCCTGCATTTCACAAGCTCTTCTACACTACAGTAATGAACACCAATGGGCTCTGAACACTGGATGGCATGGGATGGTCATTGAGAActtaaaaggttaaaaacaaaaaggccaaTCAGTTCAGATTTAGTCACATTGCAGAAGGAAGCTCAGGttgtgtgcatttctttaaCTCTCTCTCTTGAATGAAATTCTAGGTAAACCGCTTAGCCTCCGCAGCATGGGACTGGGTACAGGGGGTTAGAAagaaaaagccaaacaaaacttttaaggagggttgtttaaaaaaagggaaattccACATTTTATGCCAACAAAATACAGCTTCCATCATGCTTTCTGCACAAAGGGAGTGGTGTACTCTTTGTTCCATACACTAACATCCCCGAATACCCAGCCCTCCCCaggaaaagaaattaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10847 XPA; DNA-repair protein complementing XP-A cells

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115365 lncRNA downstream 56635 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 143602 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 414033 18492538 ~ 18493230 (-) True G92444
TU115296 lncRNA downstream 417170 18489551 ~ 18490093 (-) True G92443
TU115295 lncRNA downstream 421259 18485267 ~ 18486004 (-) True G92442
TU115412 lncRNA upstream 161367 19073238 ~ 19073865 (-) True G92539
TU115414 lncRNA upstream 214189 19126060 ~ 19126349 (-) True G92541
TU115513 lncRNA upstream 700834 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 701370 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 954101 19865972 ~ 19866417 (-) True G92657
AMCG00017702 mRNA downstream 10756 18890221 ~ 18896507 (-) True AMCG00017702
AMCG00017704 mRNA downstream 17737 18878222 ~ 18889526 (-) True AMCG00017704
AMCG00017703 mRNA downstream 29073 18865756 ~ 18878190 (-) True AMCG00017703
AMCG00017696 mRNA downstream 58022 18843890 ~ 18849241 (-) True AMCG00017696
AMCG00017697 mRNA downstream 78704 18823400 ~ 18828559 (-) True AMCG00017697
AMCG00017701 mRNA upstream 1294 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017707 mRNA upstream 284250 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017709 mRNA upstream 455843 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017711 mRNA upstream 514168 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017715 mRNA upstream 739645 19651516 ~ 19654680 (-) True AMCG00017715
TU115289 other downstream 444087 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1432924 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 2876358 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 2876358 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 3039616 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 501116 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 506330 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4406255 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4406255 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4406255 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile