RNA id: AMCG00017701


Basic Information

Item Value
RNA id AMCG00017701
length 2630
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00017701
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18913165 ~ 18924436 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCTATGGCGCGGGTGGAGCGGGGGATCCTGGGAGCGCAGGGCGGGAGGGGCTGTGGATGCAAACCGGGCCCGGGCGGCCGGCGCTGACTCTCCCCGGCGCGCTGGGCTGGACTGCGCCTAGTTTTGCGTCTTCctctaaaataaagaacaatcTGCTACATTCGGCTactattacaaaaacaaaggtTCCTGGTGTTCGTTTGGGATTATAGCTCGATTCAGAACAGGCACCACATGCTTTTTCGTGGGATTTAACATATTGCACTGGGTTCCTCGCAACTGAACAACGTTATAAAACGATCCAAACTTGTTGCCCTGCTTTCGTGTGTGAGGGACTGAAGTCCTGGGCCGCCGGCTGTGCGGGAATGGAGGAAGACGAGGGCGAGAGACTCATCCCCGAGCCCGGCACAGATCTGGCGAAACTGCTGGAGTATAAGGTGTACAGACGGAGATGGTTCATCCTGGTGGTGATCTGCCTTCTCAACAGCTCAAACGCGATGATATGGCTGAGTTTTGCTCCAGTTGCTGATCAGACAGCCCAGTATTTTAATGTGACTCTGGATCAGATAAACTGGCTGTCTCTCATTTATATGGTTGTAGCCATTCCTGTAAGCTTTGGAACAACATGGATGCTCGACACTTTAGGACTCAAAACTTCGTTGATCCTGAGCTCCTGGCTGAACATGACCGGCAGTATCTTACGCTTCATCAGCATCTTGAGCAAATACCCCACCTGGCTTATGTTCTACCCTCTGCTGATGTTCGGCCAGACTCTGTGTGCCCTGGCCCAGCCACTTGTCATCTTCTCCCCTACTAAGATGGCAGCTCTGTGGTTTCCAGAGCACCAGAGAGCCACTGCCAATATGATCGCCTCTATGTCTAACCCTCTGGGAATTCTGTTTGCCAACATCTTGTCTCCTCTGATTGTGAAGAACGAAAGCGGCCTTCCGTTAATGttgggAATTTACGCTTTTCCAGCTTCCATTGCCTGTCTCCTAGCAACACTGTTCATCAGGGCGAGCGCTCCCCCAACACCCCCCTCCGCGAGTGCTGAAACGTCCAATTCAGAGCCTTTCCTGAAGGGAATGAAACTGctgctgaaaaacaaagcatacatGATTCTTCTGCTGTGTTTCGGCTGTGGCATCGCCATCTTCACCTGTTTCTCCACACTGCTTGAGCAGATCCTGTGTGTTAAAGGATACACGAACGACTTCGCGGGGCTTTGTGGAGCTCTCTTCATTGTGTTCGGCGTGGTGGGAGCTTTCCTTCTGGGGCTGTTTGTGGACAAAACAAAGAAGTTCACCGAAGTCACCAAAATCAACATGTGTCTTGCTGCACTGGCCTGCATTGCATTTGCACTGGTATCTCAGATGAAACATCAAAACTTTGCAATAGCTGCTGCCAGTTCGTTGTTTGGCTTTTTCGGATTCTCAATATATCCCGTTGCCATGGAGTTGTCAGTCGAGTGCTCCTACCCCATCGGAGAGGCCACATCAGCGGGCCTGATCTTCATATCTGGACAAGTCCAGTCCATTGTTTACATCATCCTGTTCCAGCTGATGACCAAGCAGATGGCAGAAGCACCCGATGTAACCTGCGCACTGGGAGACAATTCTCTGTTGAGCTGGAGAGTGCCGAATATGGTGATGGCAGCTATCCTCAGTGTGGGAGTTTGCgtctttgttgtcttttttcacacagaATACAAACGTCTCAAAGCAGAAGCATCTGTGACTCAAGGGGCAGACAGTAAACTGAACGATGACATTGATAATGTTGTAGAGACTGAGtgactgggagacacagcaccCATCTCCCACACTTTTCAACAACAGTCTCCTTTGGAGTTTGCAGAACAGTGGATTGTAAGAGGAGACCTCTGGGGAATACAAGGCTTGTTCTTTTATCAAAAAGAGACTAAACTTACTTCAGggtttttttccttccttttgctGCAGTTCTTGcatttaataatgattaaagtGCTGCTATTGCAGAACTGCAGTTACAGTAATGTTCCCCTCCCTTGAGTGCACCCACTGTGTTTTAACTGCAAACATCTGGTCAAATGTTTGCAAATAACAATTGatgattcattttgtttattccttGTGGCTTAACAAGAACTTTGGTCGCTCTGCACGTGGTAGAGAAATAATGAGGAAGCTATATCAAAATAGCTTGTGCCATACAAGGACCTTTTCCAGTTTCACTTTGAAATCTCACAAGTCTTGCCACTTTGAATGTGTCTCGGTATGCACTAAATTGTTATCCAAAGTACTTGTAACTGCAGAACCAGTAACCATTtgtatattgattattataattttgttgttgttgttaatgtcaATTTTTTTCAGgactattttattaataaaatatattttacagttcttGGAAGATTTTAtgcaatgtaataatttaagaTGATTTGTAAAGGTACAAAAATGACCAAGCTGAGGAAAGTTCAATaaaaaattgtatgtatgtttgcgaataaatttgtatatttcttttctctttttcaaggCTCAATATTGTTAATCCTAGAAATATAGCACTTTCCCATGCAAACTTATCATATAACAGTAATTTCTGTagtgtattcaaattaattaaattccc

Function

GO: NA

KEGG:

id description
K12306 MSFD7, SLC49A4; MFS transporter, FLVCR family, MFS-domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115365 lncRNA downstream 62537 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 149504 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 419935 18492538 ~ 18493230 (-) True G92444
TU115296 lncRNA downstream 423072 18489551 ~ 18490093 (-) True G92443
TU115295 lncRNA downstream 427161 18485267 ~ 18486004 (-) True G92442
TU115412 lncRNA upstream 148802 19073238 ~ 19073865 (-) True G92539
TU115414 lncRNA upstream 201624 19126060 ~ 19126349 (-) True G92541
TU115513 lncRNA upstream 688269 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 688805 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 941536 19865972 ~ 19866417 (-) True G92657
AMCG00017700 mRNA downstream 1294 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017702 mRNA downstream 16658 18890221 ~ 18896507 (-) True AMCG00017702
AMCG00017704 mRNA downstream 23639 18878222 ~ 18889526 (-) True AMCG00017704
AMCG00017703 mRNA downstream 34975 18865756 ~ 18878190 (-) True AMCG00017703
AMCG00017696 mRNA downstream 63924 18843890 ~ 18849241 (-) True AMCG00017696
AMCG00017707 mRNA upstream 271685 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017709 mRNA upstream 443278 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017711 mRNA upstream 501603 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017715 mRNA upstream 727080 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017716 mRNA upstream 732497 19656933 ~ 19659528 (-) True AMCG00017716
TU115289 other downstream 449989 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1438826 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 2882260 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 2882260 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 3045518 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 488551 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 493765 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4393690 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4393690 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4393690 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile