RNA id: AMCG00017702


Basic Information

Item Value
RNA id AMCG00017702
length 1873
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00017702
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18890221 ~ 18896507 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCATGTGTATGAGTGCAACACAAACTGTCTTCCGGAGGAGCTGACGTTGTCAGATTCCCCTGGCCTCTAGACTGATTTCacaactgaaatgtattcagcATCTGATATGTCTCCGGATGAACCTGACAATTCTGTGTTTCCTGAGTTGGAAGTTGAAAACCTTATCCTCCCAACTTCAAAGCTCCTGAAGCCCCCATCTGAAGCTATCTTTCGTAAACAGTACACATTTGCAAAGAAGAGGgCATTTGCCATTTTTGTGCACTCAAAGAAGGCTGCAGCATCGGGGGCAGAATTGTCTAGTGGTGATCTTGAAGCCCATTGGCACTGCTGTGAGCAGACCTTTAAGGAGGCCGCTTCCATTCACAAACACGTTGCCAAGACACATGATGCAGAGATCCAGGAGCACACCATTGCCATCCTCAGGCTTGTGGGGAGTAGAGGCCAGGCAAGAGACAGCCAGCCTCCAGCCCAGAGCCCTGtgggggagaagagagaagcaTGGGATGTGTCACTGTGGATTCCTGACATCAGCCACTTAACGGAGGACCAACTGCACAGGGGCCCAGGTGAAGTACTGCTGTATTACTGTTATTGTCACCTGGAGACACCCCACCTAATCTGTGCTTGGCAGAGGGAACTCTGTCAAAAGCTGCAGCTTAAAGGCAAGGTACGAATTGCCACAGAGGGAATTAATGGGACAATAGGAGGCAGCAAAGTGGCCACTGGGTTATATATCAAGGCAATGCTTTCCCATCCAATCTTTAAGATCATGTGCCACAATGACTTCAAGACCAGTGAGGGGGGGGCTCACTGCTTCCCAGACTTAAAGGTGGgagtttttaaagaaattgttCCCATGGGGGTGGACCCAGATCTACTCTCCTACAGGCTTGCTGGAACCCACTTAGAACCAGAGGAGTTTCACAAAGAGGTGGAAACATTTCTGTTAAAAGGCAATTCAAGCAACGACACAATTCTCTTGGACTGCAGGAACTTCTATGAGAGCAAAATTGGACAGTTCACCAAATGTTTGGCTCCTGATATCCGTAAATTCAGTTATTTCCCAGATTACGTGGACAAGAATTTGGAGCTCTTCAGGGGTAAGAAAGTCCTGATGTACTGCACTGGGGGGATCCGCTGTGAGCGAGGCTCGGCCTACCTCCGCTCAAAGGATGTGTGTACAGAGGTGTACCAGCTGAAAGGTGGCATTCACAAGTATGTGGAGCGCTTCCCTGAGGGATTCTACCAAGGAAAACTCTTTGTGTTTGACGAGCGCTACGCTATTCCTACCAGCAGTGACATCATCTCGGAATGCAGGTACTGTGGTACCCCATGGGACCAGTACCAGCCCTGCTCCACAGACTTCTGCTACCAGCTTGTCCTCTCCTGCCCAGCTTGTCGCCAACAAGGCCATACAGCCTGCTGCTTTGTCTGCCAAGGCAAAGCTCAAAGAAAGGAAGAGGCTGGGGAGAACACGCCCGCAGAGCCGCTGCTGAAGGAAGAGTGTGAGTGCACAGACACGCGTGCACGGGTGCCCTGTGACACGCTTCCACAAGCCTGCCTTCAGACTCATTAGCCTGACTACAGAGATCTCAAGAAGCACAAGAAAAGTTGCTGAAACCAGAATGACAGAATGCAagaacatattgttttattactcGACTGGATATGCATAACATATATGGAATAAAGTGCTGCCATCCCTCCTGACTTAAATCAACTTTTGGATTAAAAACATACCATAACAATGATCTACCCTCGATGTGCTTGGCCAGGGGAAGGTCAGCACTATGGAAATTGGCTAATTATGGAACTGTCTGATAATAGTTATGTACTGTTTTAGATTAAcaataaattgattattttgcaaaa

Function

GO:

id name namespace
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115365 lncRNA downstream 39593 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 126560 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 396991 18492538 ~ 18493230 (-) True G92444
TU115296 lncRNA downstream 400128 18489551 ~ 18490093 (-) True G92443
TU115295 lncRNA downstream 404217 18485267 ~ 18486004 (-) True G92442
TU115412 lncRNA upstream 176731 19073238 ~ 19073865 (-) True G92539
TU115414 lncRNA upstream 229553 19126060 ~ 19126349 (-) True G92541
TU115513 lncRNA upstream 716198 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 716734 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 969465 19865972 ~ 19866417 (-) True G92657
AMCG00017704 mRNA downstream 695 18878222 ~ 18889526 (-) True AMCG00017704
AMCG00017703 mRNA downstream 12031 18865756 ~ 18878190 (-) True AMCG00017703
AMCG00017696 mRNA downstream 40980 18843890 ~ 18849241 (-) True AMCG00017696
AMCG00017697 mRNA downstream 61662 18823400 ~ 18828559 (-) True AMCG00017697
AMCG00017698 mRNA downstream 83044 18800999 ~ 18807177 (-) True AMCG00017698
AMCG00017700 mRNA upstream 10756 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017701 mRNA upstream 16658 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017707 mRNA upstream 299614 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017709 mRNA upstream 471207 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017711 mRNA upstream 529532 19426039 ~ 19433689 (-) True AMCG00017711
TU115289 other downstream 427045 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1415882 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 2859316 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 2859316 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 3022574 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 516480 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 521694 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4421619 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4421619 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4421619 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile