RNA id: AMCG00017703


Basic Information

Item Value
RNA id AMCG00017703
length 2789
RNA type mRNA
GC content 0.45
exon number 16
gene id AMCG00017703
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18865756 ~ 18878190 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTATCTGCAATTACCTGTCATAACGTCCAACACCATTGTGAGATGTCGCTCCTGTCGAACTTATATTAACCCTTTCGTGTCCTTCCTGGACCAGAGAAGGTGGAAATGTAACTTATGCTACAGAGTGAATGATGttCCTGATGAGTTCATGTACAATCCCCTGACACGGTCCTATGGTGAACCTCACAAACGACCAGAGGTACAGAACTCAACAGTGGAGTTCATAGCCTCTTCAGATTATATGCTGCGTCCTCCTCAGCCTGCTGTGTACCTGTTTGTCTTAGATGTCTCTCACAATGCAGTGGAAGCTGGCTATCTGAATGTACTTTGTCAAACACTATTGGAAAACCTGGAAAAGCTGCCTGGGGACACACGGACAAGAGTGGGATTTATAACGTTTGACAGCACTATTCACTTTTATAATCTGCAGGAGGGGCTGTCACAGCCCCAGATGCTTGTGGTCTCTGATATTGATGatatctttataCCTACTCCTGATAGTTTACTAGTAAATCTCAAGGAGAGCAAAGAGCTGGTGAAGGACTTGTTGAATGCCCTGCCCAACATGTTCACCCACACCAGAGAGACCCACAGTGCCCTGGGGCCCGCCCTGCAGGCTGCCTACAAGCTCATGTCCCCGACTGGAGGACGGATTTCTGTGTTCCAGACGCAGCTGCCCTCTTTAGGAGCTGGTCTTCTGCACTCCAGAGAAGACCCCAACCAAAGATCTAGCACTAAGGTTGTGCAGCATTTAGGACCAGCGACAGACTTTTACAAGAAGCTGGCGTTGGACTGTTCTGGACAACAGATAGCAGTGGACCTCTTCCTTCTGAGTTCCCAGTACTCTGATATGGCATCGTTAGCTTGTGTGTCTAAATATTCAGCAGGAAGCATATTTTACTACCCATCTTTCCATGATGTCCACAACCCCACTCAGATGGAGAAGTTTCAGAAGGACCTTCAGCGATACTTAACCAGGAAAATTGGCTTTGAGGCAGTAATGCGAATAAGGTGTACCAAAGgtCTTTCAATCCACACGTTTCATGGGAATTTCTTTGTTCGATCCACTGACCTGCTGTCCTTGGCAAATGTCAATCCAGACTCTGGGTTCGCTGTGCAGATGTCGATTGAAGAAAGCCTAGCAGACACgtctttagtttgttttcaagCAGCTCTTCTGTACACGTCCAGCAAAGggaaGAGAAGAATTCGGGTGCACACGTTGTGCTTGCCTGTTGTGAACTCACTGAGTGATGTGTTTGCTGGGGCTGATGTCCAGGCGAtcacatgccttttggcaaatATGGCTATCGACCGATCTGTGTCTTCAAACTTGTCGGATGCGCGAGATGCCCTGGTAAACGCAGTGGTGGACTCGCTGTCTGCGTACCGCTCCACTGTTTCCAACCTCCAGCAATCCGGCCTAATCGCCCCAGCCTCGTTGAGGCTCTTTCCTCTCTATGTATTGGCACTGCTCAAACAGAAGGCCTTGAGAACAGGCACCAGCACGCGCCTGGATGACCGAGTCTTCGCTATGTGTGAATTCAAAAGTCAGCCCCTGCAGCAGATCATGCGCATGATCCATCCCAACCTGTACAGGATAGATGACCTGTCTGATGAGGGAGCACTTCATGTCAATGACACCATGGTGTCTCAGCCGCCGATCCTCCAGCTCACCGCGGAGAAGATCAGCATACAGGGGGCTTACCTAATGGACTGTGGCACAactCAGATTCCAGAACTAGAGACGCCTTCCTCTGAAAGAACGAGATCGTTTATTAATTGGCTTCAAGAGAACAGGTCATTCAGCCCTATCCTTCATGTTGTGAAAGATGACTCATCAGCTAAAACCAACTTTTTCCAGCAATTGATTGAAGATCGAACGGAAGCAGCACTATCCTATTATGAGTTTTTGCTCCACATTCAGCAGCAGTTGTCAAAGTAAATAGCCGTGCAACACTAGCCTAAGGTGTAAGGGTAGGAGTGTCTTACGGTACCTACAATGTGGCAAATCTTTAGAGGAAGGCCTCCACCTGGCTTTGTAGTCTACGTCTGTGGAGATTGCAGTAACTACCAAACTGGTAATGCTGTGATGACTGAGCCGCTAATGTTTGGCCTAAAGCCATTGGAGGTTGATCAACCTGAAAGGAATTTTTGGAAGGAAAGGGGTTTACAGTAGCAGGAATGGCATCTGCAACAGGTTTCTTACCTTCTTCCTTTAtagaaaaagaagaacatgCATATTGATTCATAGTTGCTTTCAGCGGTTGGAGTTGCATAGGTAGCAGTTCACTGAGACAATCTTTCTTTGTGGAATGTAAGTGGACCCGAGAGCTACTTCATACATTTAACACaagaaatgttttgcaaaatggGAGGCAGAGCAgatgtgcatgtttgtttttgtttgtttgtttttggtttaatccGGTTTTTAAATTGGTTGAGTGTCCATTTAATTATGACAAATGCCTTCCCATTTTTTGCAAGAATCATAGGAATTGGGGAACCAGTTTTGATGTACATTGTAAAGCCATGTATGGTTTGTGTCTGCTAAATGGAGAGAGTGCACTGTACTGTGCACATAGCTCGAATGAATAGCACTGCCTGAAGTGTAGAACAGTCCAGGTTTTTAATGTCCAGGTGAGACTTTAGTTCCTGTACaacccacttttttttttttttcctctgccaATAACAGAAATTGTTCCACTTTGTAATTCTCTTGCAAATCTTttatgtgaaattatttatgatctgcttattaaataaaacaaaacaata

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14007 SEC24; protein transport protein SEC24

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115365 lncRNA downstream 15128 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 102095 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 372526 18492538 ~ 18493230 (-) True G92444
TU115296 lncRNA downstream 375663 18489551 ~ 18490093 (-) True G92443
TU115295 lncRNA downstream 379752 18485267 ~ 18486004 (-) True G92442
TU115412 lncRNA upstream 195048 19073238 ~ 19073865 (-) True G92539
TU115414 lncRNA upstream 247870 19126060 ~ 19126349 (-) True G92541
TU115513 lncRNA upstream 734515 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 735051 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 987782 19865972 ~ 19866417 (-) True G92657
AMCG00017696 mRNA downstream 16515 18843890 ~ 18849241 (-) True AMCG00017696
AMCG00017697 mRNA downstream 37197 18823400 ~ 18828559 (-) True AMCG00017697
AMCG00017698 mRNA downstream 58579 18800999 ~ 18807177 (-) True AMCG00017698
AMCG00017699 mRNA downstream 75416 18782730 ~ 18790340 (-) True AMCG00017699
AMCG00017695 mRNA downstream 128498 18727699 ~ 18737258 (-) True AMCG00017695
AMCG00017704 mRNA upstream 32 18878222 ~ 18889526 (-) True AMCG00017704
AMCG00017702 mRNA upstream 12031 18890221 ~ 18896507 (-) True AMCG00017702
AMCG00017700 mRNA upstream 29073 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017701 mRNA upstream 34975 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017707 mRNA upstream 317931 19196121 ~ 19202825 (-) True AMCG00017707
TU115289 other downstream 402580 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1391417 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 2834851 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 2834851 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 2998109 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 534797 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 540011 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4439936 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4439936 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4439936 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile