RNA id: AMCG00017707


Basic Information

Item Value
RNA id AMCG00017707
length 360
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00017707
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19196121 ~ 19202825 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAAGATGCTTGGTGGGGATGAAGAGAAGGACCCAGATGCTGAAAAGAAGgaagaagaaagacaagaaGCTCTTAGACAACaggaagaggagaggaaggcaaaatatgcaaaaatggaagcagaaagagaaacaatgcGTCAGGGCATCAGGGATAAGTATGGCATTAAGAAGAAGGAGGAACGAGAGGCAGAAGCTCAGGCTGCAATGGAGGTAGCTGCAGAAGGCAGTCTTACTCGTCCAAAGAAGGCAATACCTGCTGGATGTGGTGATGAAGctgaggaggaagaagaaagcaTCATAGATACTGTCATGAAATACCTTCCTGGTCCCCTTCAAGAcatgtttaaaaagtaa

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
K15294 CPLX1_2; complexin-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115414 lncRNA downstream 69772 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 122256 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 345493 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 432460 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 702891 18492538 ~ 18493230 (-) True G92444
TU115513 lncRNA upstream 409880 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 410416 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 663147 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 664593 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 703167 19905992 ~ 19920152 (-) True G92682
AMCG00017701 mRNA downstream 271685 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017700 mRNA downstream 284250 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017702 mRNA downstream 299614 18890221 ~ 18896507 (-) True AMCG00017702
AMCG00017704 mRNA downstream 306595 18878222 ~ 18889526 (-) True AMCG00017704
AMCG00017703 mRNA downstream 317931 18865756 ~ 18878190 (-) True AMCG00017703
AMCG00017709 mRNA upstream 164889 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017711 mRNA upstream 223214 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017715 mRNA upstream 448691 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017716 mRNA upstream 454108 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017720 mRNA upstream 493728 19696553 ~ 19810128 (-) True AMCG00017720
TU115289 other downstream 732945 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1721782 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 3165216 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 3165216 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 3328474 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 210162 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 215376 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4115301 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4115301 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4115301 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile