RNA id: AMCG00017708


Basic Information

Item Value
RNA id AMCG00017708
length 2211
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00017708
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19352888 ~ 19363242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAAAATtgacaaaaacaggaaaaggaagTTGAGGGTCTGCGTTGCCACATGTAACCGAGCCGACTACTCCAAGTTGGCCCCGATTATGTTTGGCATCAAAGGTGATCCAGACAACTTTGAGCTGGAGGTAGTGGTCTTGGGCTCCCATCTTATCGATGATTATGGCAACACGTACCGCATGATCGAGCAGGATGACTTTGACATCACTTCCAAGCTCCACACTATCGTGCGAGGTGAGGACGAGGCAGCCATGGTGGAGTCGGTGGGACTGGCTCTGGTGAAGCTCCCCGACGTGCTGCACCGCCTGCGACCAGACGTGCTGATCGTGCACGGTGACCGCTTCGATGCCCTGGCTCTGGCCACGGCCGCCGCGCTCATGAACATCCGCATCCTGCACGTGGAGGGGGGCGAGGTGAGTGGCACCATTGATGACTCCATCCGCCACGCCATCTCCAAGCTGGCGCACTATCACGCCTGCTGTACCCGCAGTGCAGAGCAGCACCTCATCGCCATGTGTGAGGACCACAGCCGCATCCTGCTGGCCGGCTGTCCCTCCTACGACAAGCTGCTGTCAGCCTGCGGCAGAGACGACTACGCAGACGTCATCCGCAACTGGCTAGGAGATGTAAAAGAACAGGACTACATCGTGGCTCTGCAGCACCCGGTTACAACTGACATTAAAAACTCCATCAAGATATATGAGCTGATGCTGGATGCTCTTATATCCTTCAATAAAAGAACACTAATACTCTTCCCTAATATCGATGCAGGCAGTAAGGAGATGGTGAGAGTAATGAGGAAGAAAGGCATCGAGTGCCACCCCAATTTCCGGGCAGTAAAGCATGTGCCCTTTGATCAGTTCATCCAGCTGGTTGCTCACGCAGGGTGCATGATTGGCAACAGCAGCTGTGGAGTGCGTGAGGCTGGGGCTTTTGGCACTCCTGTCATCAACCTTGGGACCcggcagactgggagagagacaggTGAAAATGTTCTCCATGTGAGGGATGCAGATACCCAGAAGAAAATCCATCATGCTCTTGAGCTTCAATTTGGAAAGCGGTATCCATGTTCAAAGATCTATGGTGATGGCAATGCGGTGAGCCGGATCCTGAAGTTCTTGAACACCATTGACCTGGATGAGCCACTGCAGAAAACCTTCTGCTTCCCCCCAGTGAAGGAATGCATCTCCCAAGACATTGACCACATCCTGGAGACACAGAGTGCTTTATCTGTGGATCTGGGGGGTACCAACCTCAGAGTGGCCATTGTCAGCATGAAGGCAAGGGCTGAGTTTGAACCTTCTGAGAAACGATATGGAGAGATTGTGAAGAAATACACCCAGCCAAACCCCAAAACCTACAAAGCTAGAATTGAATTGATCCTGAAGATGTGTATAGAGGCCGTCTCTGAAGCTGTGCATTATAACTGCAGGATTCTTGGAGTAGGTGTGTCCACAGGAGGTCGTGTGAACCCACAAGAAGGGGTGGTCCTACACTCCACCAAACTGATCCAGGAGTGGAGTTCGGTGGACATCAGGGCGCCTATCTCAGACTCACTGCACTTGCCTGTGTGGGTGGACAATGATGGGAACTGCGCTGCCCTAGCAGAAAAAAAATTTGGCCATGGGATAGGGGTGGAGAACTTCGTGACTATCATCACTGGGACAGGCATTGGCGGTGGCATCATCCAGCACAATGAGCTCATCCATGGCAGCACCTTCTGTGCCGCAGAGCTGGGCCACATCATAGTGTCTCTGGACGGTCCGGAGTGTATGTGTGGCAGTCGGGGCTGTATGGAGGCCTATGCATCAGGAATGGCACTGCAAAGGGAAGCTAAAAGGCTGCATGATGAGGACCTGCTGGTAATGGAAGGAATGTCACTGAAGAACGAGGAACCTGTCAGCGCTGCCCACCTGATCTCTGCTGCCAGATGGGGAAATTCAAAAGCAGAAGCTATCCTTAGGACAGCTGGAGCAGCACTGGGAGTTGGTATTGTGAACATCCTTCACACAGTCAACCCTTCCCTGGTTATCTTGTGTGGAGTTCTGGCTTCATATTATGAGAACCCTGTAAAGCAAATAATCAGCCAACGGGCACTGAGCTCTGTACAGGGCATCAAGgtgctgacctctgacctggaAGAACCTGCACTGTTGGGTGCTGCCAGTATGGTACTAGATTATGCCACGCGGAGAACATATTAG

Function

GO: NA

KEGG:

id description
K12409 GNE; bifunctional UDP-N-acetylglucosamine 2-epimerase / N-acetylmannosamine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115427 lncRNA upstream 153642 19191195 ~ 19199246 (+) True G92552
TU115409 lncRNA upstream 348351 19001740 ~ 19004537 (+) True G92536
TU115368 lncRNA upstream 494658 18857946 ~ 18858230 (+) True G92502
TU115338 lncRNA upstream 547833 18804312 ~ 18805055 (+) True G92475
TU115323 lncRNA upstream 589224 18762391 ~ 18763664 (+) True G92463
TU115466 lncRNA downstream 32786 19396028 ~ 19413956 (+) False AMCG00017710
TU115468 lncRNA downstream 32786 19396028 ~ 19419001 (+) False AMCG00017710
TU115499 lncRNA downstream 61442 19424684 ~ 19428648 (+) True G92596
TU115512 lncRNA downstream 247806 19611048 ~ 19611287 (+) True G92607
TU115529 lncRNA downstream 289963 19653205 ~ 19654620 (+) True G92620
AMCG00017705 mRNA upstream 355956 18969596 ~ 18996932 (+) True AMCG00017705
AMCG00017706 mRNA upstream 445593 18896486 ~ 18907295 (+) True AMCG00017706
AMCG00017693 mRNA upstream 861338 18483471 ~ 18491550 (+) True AMCG00017693
AMCG00017692 mRNA upstream 888941 18460767 ~ 18463947 (+) True AMCG00017692
AMCG00017691 mRNA upstream 900084 18444938 ~ 18452804 (+) True AMCG00017691
AMCG00017710 mRNA downstream 38865 19402107 ~ 19433103 (+) True AMCG00017710
AMCG00017712 mRNA downstream 81286 19444528 ~ 19445098 (+) False AMCG00017712
AMCG00017714 mRNA downstream 238227 19601469 ~ 19609786 (+) True AMCG00017714
AMCG00017713 mRNA downstream 254798 19618040 ~ 19633716 (+) True AMCG00017713
AMCG00017717 mRNA downstream 320551 19683793 ~ 19694234 (+) True AMCG00017717
TU115411 other upstream 279226 19073238 ~ 19073662 (+) True G92538
TU115097 other upstream 1746680 17601535 ~ 17606208 (+) False AMCG00017668
TU114914 other upstream 3217572 16135025 ~ 16135316 (+) True G92130
TU114906 other upstream 3485254 15867031 ~ 15867634 (+) True G92123
TU114828 other upstream 4236857 15112610 ~ 15116031 (+) False AMCG00017650
TU115469 other downstream 38844 19402086 ~ 19411990 (+) False AMCG00017710
TU115496 other downstream 58068 19421310 ~ 19423679 (+) False AMCG00017710
TU115510 other downstream 80930 19444172 ~ 19528293 (+) True AMCG00017712
TU115788 other downstream 1436353 20799595 ~ 20815546 (+) False AMCG00017747
TU115792 other downstream 1457269 20820511 ~ 20821947 (+) False AMCG00017747

Expression Profile