RNA id: AMCG00017709


Basic Information

Item Value
RNA id AMCG00017709
length 1714
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00017709
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19367714 ~ 19384083 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACCATCCAGCTCCCTGCGCTTGTCTTACGTGATCTGTGGTTGGTCGAAATGGATGTCGATCAAAGCCTTCTGTATCTGATTGGCTCCCACGGTTTCCGCTTTATCGCACGCTGAAGCCATTTTCAACGCCCTCTGTTTAATCTAGGTCTGACCTCTCTCACTGACTGTAATTGTAgtccattttcatttattttcacccTTTTTTGTCCCTCGGCAGGGGTCTTTCTCTCTTTGTAGGTAGATATGGATGATTTCGATTTACTTAACGCCCCGCAAAATCCTGCCGGGAACGGGGTTGCAGCGGAGGAGGACCCCGCGGCTGCTTTCTTGGCCCAGCAAGAGAGCGAGATAGCGGGGATAGAGAACGACGAGGGGTTCAGCATCCTGGATAGCGGGGACGTCCCGTCTTCGCTGGGTAACAGTCTGACAGCTGACATGCTCCAGGAAACAAACGaagCCATTGATGCTGCATTTAATGGAGAGGTCTATCAGGAGAGCAATGGGCCCTCGGACGCGTATGCAGCCATATCTCATGTGGATCGTCTGCAGGCAGAGCCAGAGAGTCTCCGCAAATGGAGGGAGGAACAGCTGGAACGCCTGGAGGTCCTGGATGCAAATTCCCGTAAGCAGGAGACAGAGTGGAAGGAAAAAGCAAAGGTAGAGCTTGAAGAATGGTACACCAGGCAGGACGAGCagctggagaaaacaaaagtcAATAACAGAGCGGCTGAAGAGGCGCTCGTGACGGATATGGATGAGAACAACCCTGGCACCGAGTGGGAGCGTGTGGCCCGTCTCTGTGATTTCAACCCCAAGTCCAGCAAGCAGTCCAAAGATGTGTCTCGCATGCGATCTGTTCTCATTTCTATGAAGCAGACCCCACTGGTACACTGATGTTCCCAAGCACAAATGAACAACACTATCACCACCACTACAACTGTTAGTATggcaatattttaaacattaaaactcaGAGAAACTGCAGTAAATGGATTGATTCCCCttcaattatcttttttttttttttaattcttattctTTTAAGGACCAAAAGTAATTGTGCGTGTTCCCTTTAGAGctgatttgtgttttcatttaagatctatgcatttctttttgaaCATCCCAGGAATAAAGTAATATGTGTtttgaagtgtgtgtgagtgtatgtatggtgtggtatattatatattatatatatataatatataatatataatgagcTGTAGCCCCAGTGTTGCTTCTTGTGCATTACAGAGTATCTTGTCTTCAATGTATCTATAAAGTGGTATTAAAAGTGTATGAAACCCTACTTGGTGTGTCTTGTGAATACCTACTTTTGccccatttaaaatgcatgcatattaGCAGACTGTCAATGTGATTTCTTGAATTATTCCTGTCAGAAGTGAGCTGTGTTTTATAGATCATGGGACAGCCAAACTACAGTAATAAAGCTTTCCCAGATTTTACAAATGAAGTCGTATATCAAATGCATCTTCCAGGGTGTCTGCTTTACCcaaattaatgttgaaacatttgaaacatcTTAAATGGTAATAGGTATTTTAAGAATACTAATACATTGTTGTCCCCGTGTCCTTGACATTAAATCTCGAAAATgcttttgattaataataaatatttttgaatttaCATTTGCTGGATTTATGGAGAAAACAACTTTCAATTTAGTCTGTTGTTAAACAATA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04644 CLTA, LCA; clathrin light chain A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115414 lncRNA downstream 241365 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 293849 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 517086 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 604053 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 874484 18492538 ~ 18493230 (-) True G92444
TU115513 lncRNA upstream 228622 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 229158 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 481889 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 483335 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 521909 19905992 ~ 19920152 (-) True G92682
AMCG00017707 mRNA downstream 164889 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017701 mRNA downstream 443278 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017700 mRNA downstream 455843 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017702 mRNA downstream 471207 18890221 ~ 18896507 (-) True AMCG00017702
AMCG00017704 mRNA downstream 478188 18878222 ~ 18889526 (-) True AMCG00017704
AMCG00017711 mRNA upstream 41956 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017715 mRNA upstream 267433 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017716 mRNA upstream 272850 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017720 mRNA upstream 312470 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017728 mRNA upstream 484916 19868999 ~ 19869457 (-) True AMCG00017728
TU115289 other downstream 904538 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1893375 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 3336809 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 3336809 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 3500067 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 28904 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 34118 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 3934043 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3934043 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3934043 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile