RNA id: AMCG00017711


Basic Information

Item Value
RNA id AMCG00017711
length 1579
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00017711
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19426039 ~ 19433689 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatatatatatatatatatatatatatatgtcatatagATATCAGGGTGTGTCTCCTCATGGTAGTTGGCCGTAGCTCAATCTGCTGAAGGCAGTTAAGCAACAGTCAGGTAGGAAGTGTCAAAATGGCTGAGGGATTCTCTCCATCAGAGCCCATCTGTAGTGTGTGCCAGGGTGTCAGCAAGGTGCCTGTCATGCTCTCCTGTTGGCATCCCTTTTGTTTGGCTTGCATTGAGCGTGTCTGGTGCCAAAACCCCAGCATTGACCATGGCTGCCCGGTGTGTCTGAAACTGCCTGTCTCATATTGCCCCGCAAAAAACCCCGGGATGCCACACTGTCCCGTGGGCGTGTTATGTGACTTCTGCCTTGGGGAGAAGCTGCCGGCCCTGAAGACGTGTCTGACGTGTATGGCCTCATTTTGCGAGGACCATCTGCGGCCCCACCTGACAGGAGAGACGTTTCGGAGCCACCGACTGGCCAAACCCAGTGATGACCTGAGTGGGAGCTGCTGCCTGGATCACGGCAAGCCACTGGAGATGTTCTGCAGAGACTGTAAGCTCTGTGTCTGCAACGTCTGCCCCATCCTAGGCTGCCACCAAGGCCATCGCATCAACATCGTGGAGCAGGAGGCCCTGGAGAAACGGAATCTACTCAAGGTTTGTCTAAACAGGATGAACTGTAAGAACAAGCAAGAATCTGCCAACGTAAAACAGACCCAAAAGGCTGTTGATGATCTCAAGGCCTTGACAGGGGAGAGTATGGCATGGCTTTCACAGCGCTTCACAGAACTGCGCCTCCTGCTGGACGAGGAGGAGAGAAGAGCCAAGGGGTTTGTGGAAGAGCAGACACAGGCCGCTCTTCTCATTTACGATGAGCAGGTCAGGGCCTGCAGGGAGCGCATGGAGGTCACTGACGGTTTCGCACAGACAGTTCAGGAGATCTACAAACATGATGACAGTGTGCAGCTCCTGAAGGACTTCACAGCAGCAGAGAAAGAGATGCAGATCCAACAGCAGCCTGCTGACCAAATTCACCCAGTCCCCCTGACCTTTGACACAATGCACACATATGTTACCAGCTTCCAGAAGGCTTTAGAGACTAGCCGAGAGACCGTGAGCTGCGGCTGGCTAAGAAAGTCTTATCCTGACGGGCCGCTGCGCTTCAACAGGCTTTGGCAGGTGCTGGGCCGGGAGTGCTACTTTGCGGGACGCCACTACTGGGAGGTTGACATGCAGCGAGCAGGCAAGGGCTGGTGGGTGGGAGCAGCCTACCGCTCCATGAGCCGCAAGGGGGATACGGAGGCTTCCCGTCTGGGCTGGAACCGGGCTTCTTGGTGCCTGAAGCGCTACGACCTGGAGTATTGGGCCTTCCACAATGGCACCCGCACCCCCGTGCTTTTGGAGGAGGACCCTGAGAGGCTGGGGGTGTTTCTGGATTATGAGGCGGGTATCCTGAGCTTTTTCGATGCCCTGTCAGGCATGCGGCGCCTCTATACCTTCCAGGCCAAGTTCACCGAGCCAGTGTACCCGGCCTTCCGGCTATGGGAAGGAGCTCTTTCTTTCTGCAAACTGACTTGA

Function

GO: NA

KEGG:

id description
K12004 TRIM14; tripartite motif-containing protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115414 lncRNA downstream 299690 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 352174 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 575411 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 662378 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 932809 18492538 ~ 18493230 (-) True G92444
TU115513 lncRNA upstream 179016 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 179552 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 432283 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 433729 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 472303 19905992 ~ 19920152 (-) True G92682
AMCG00017709 mRNA downstream 41956 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017707 mRNA downstream 223214 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017701 mRNA downstream 501603 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017700 mRNA downstream 514168 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017702 mRNA downstream 529532 18890221 ~ 18896507 (-) True AMCG00017702
AMCG00017715 mRNA upstream 217827 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017716 mRNA upstream 223244 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017720 mRNA upstream 262864 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017728 mRNA upstream 435310 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017724 mRNA upstream 455247 19888936 ~ 19890529 (-) True AMCG00017724
TU115494 other downstream 6683 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 6683 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 962863 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1951700 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 3395134 16030402 ~ 16030905 (-) True G92129
TU116215 other upstream 3884437 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3884437 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3884437 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6578972 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6578972 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile