RNA id: AMCG00017712


Basic Information

Item Value
RNA id AMCG00017712
length 363
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00017712
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19444172 ~ 19528293 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGCTGTGGGAGCCAGAGAGCCAAGGGGCGACCGAGACATGGAGAGGAAAGCGACTCCACATAGACAGCCCTACTCTTTTAGGACTTTCGCAAATGTCCTTTcgttttcattttctctgctGTCTGTAGCCTATTGCATCTTTCTCAATGTCTATACCACCGAGACCAGGGAGAGGGTGGTCGCGTTAGAAACGGGAACAGGGGAGCTCCTCTATCATCACGTCCCTGGCTTTTCCGTGGATCAGCTCAATTTAATGATACAAGAGAAAGTGGACAAACTTCTGTCGCAGAGGTCTTACGAACATTTGGCAAAGATAAGGATTGCACGGGAGGCGCCAGCTGACTGCAACTGCCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115499 lncRNA upstream 15880 19424684 ~ 19428648 (+) True G92596
TU115468 lncRNA upstream 25527 19396028 ~ 19419001 (+) False AMCG00017710
TU115466 lncRNA upstream 30572 19396028 ~ 19413956 (+) False AMCG00017710
TU115447 lncRNA upstream 60554 19348142 ~ 19383974 (+) True G92566
TU115427 lncRNA upstream 245282 19191195 ~ 19199246 (+) True G92552
TU115512 lncRNA downstream 165950 19611048 ~ 19611287 (+) True G92607
TU115529 lncRNA downstream 208107 19653205 ~ 19654620 (+) True G92620
TU115536 lncRNA downstream 210328 19655426 ~ 19659453 (+) True G92622
TU115583 lncRNA downstream 441971 19887069 ~ 19887346 (+) True G92664
TU115591 lncRNA downstream 457507 19902605 ~ 19948371 (+) True G92670
AMCG00017710 mRNA upstream 11425 19402107 ~ 19433103 (+) True AMCG00017710
AMCG00017708 mRNA upstream 81286 19352888 ~ 19363242 (+) True AMCG00017708
AMCG00017705 mRNA upstream 447596 18969596 ~ 18996932 (+) True AMCG00017705
AMCG00017706 mRNA upstream 537233 18896486 ~ 18907295 (+) True AMCG00017706
AMCG00017693 mRNA upstream 952978 18483471 ~ 18491550 (+) True AMCG00017693
AMCG00017714 mRNA downstream 156371 19601469 ~ 19609786 (+) True AMCG00017714
AMCG00017713 mRNA downstream 172942 19618040 ~ 19633716 (+) True AMCG00017713
AMCG00017717 mRNA downstream 238695 19683793 ~ 19694234 (+) True AMCG00017717
AMCG00017721 mRNA downstream 327314 19772412 ~ 19773351 (+) True AMCG00017721
AMCG00017719 mRNA downstream 362638 19807736 ~ 19819378 (+) True AMCG00017719
TU115496 other upstream 20849 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 32538 19402086 ~ 19411990 (+) False AMCG00017710
TU115411 other upstream 370866 19073238 ~ 19073662 (+) True G92538
TU115097 other upstream 1838320 17601535 ~ 17606208 (+) False AMCG00017668
TU114914 other upstream 3309212 16135025 ~ 16135316 (+) True G92130
TU115788 other downstream 1354497 20799595 ~ 20815546 (+) False AMCG00017747
TU115792 other downstream 1375413 20820511 ~ 20821947 (+) False AMCG00017747
TU116638 other downstream 5260281 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 9197632 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 9988314 29433412 ~ 29450347 (+) True G94275

Expression Profile