RNA id: AMCG00017713


Basic Information

Item Value
RNA id AMCG00017713
length 2488
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00017713
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19618040 ~ 19633716 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAGACCTCCTACACCGAAGCCTGTATGTTACTGACAATCACACAACACTGAGGGAAACGTCAATtatcatttaacatttatgtAATAGGAATTTCACTGCACTGCAATAACCTCATCCAAACTTTCACGGTCAGCATTGACACAGTCTTCAGTGTTTGCAATAAGGACACAGACACGCAGGGGGCGGTCTGGAcacagtcctgcgtgggaggacAGGATCAGCACTGGCAGCAGCAAACGCGCGTCTCTCTAGCTGACTGACAATGGCAACACAAACCTTCAGCAAAAACAGCACCATCGAGCTGAGAAAAAAGCACATCGGGCCATCTTGCAAGGTTTTCTTCAGCCACGATCCAATTAAGATCGTCCGTGCCAAGGGCCAGTACATGTATgatgagagaggagagaagtaCCTTGACTGCATCAATAATGTTGCTCATGTTGGACATAGTCACCCAGATGTAGTAAAGGCTGGGAGCAAACAGATGGAGCTCCTGAACACCAACTCACGTTTTTTACACGACAACCTTGTCCAGTATGCACAGCGGCTGGTAGCCACCCTGCCTGACAAGCTCTCTGTCTGCTATTTTGTAAATTCAGGTTCAGAAGCCAATGATCTCGCCCTTCGTCTGGCTTGGCAATACACAGGTCACAAGGACATCATAACACTAGACAATGCATACCATGGCCATGTGTCATCCCTTATCAGTATCAGCCCGTATAAATTTCATCAGCAGAAAGATgatgaaaataatgattttgtacaTGTGGCACCTAGTCCTGACATTTACAGAGGAAAATACCGAGAGGATCACCTCGATCCTGCAACAGCTTATGCTGATGATGTCAAAGACATCATTGAGCTAGCCGACAGGAAGGGCCATAAGATTGCTGCTTTTATTGCGGAGTCCCTGCAGAGCTGTGGAGGTCAAGTGATCCCTCCAGCAGGCTACTTCCAGAAAGTGGCAGAGTACGTGCGGCGAGCAGGAGGAGTTTTCATTGCTGACGAGGTGCAGGTTGGTTTTGGCCGCATTGGGAAACATTTTTGGGCCTTCCAGCTTCAAGGAAAGGATTTCACTCCAGACATTGTCACCATGGGAAAGCCCATCGGCAACGGACATCCTATGTCCTGTGTGGTCACCACCAGGGAAATCGCAGAGGCCTTCATGTCATGCGGGATGGAATACTTCAACACGtttggaGGGAATCCAGTTTCATGTGCAATTGGACTGGCCGTTCTTGATGTGATTGAAAAAGAGGATCTCCAAGGAAATGCGGTCAGGGTGGGGAATTACCTGACTGAACTGCTGAAccgacagaaagaaaaacacccaCTTGTAGGAGACATCAGGGGTGTTGGGTTGTTCATCGGCGTGGACTTGGTAAAGGATCGTGTGAAGAGAACTCCTGCCACAGCTGAAGCTCAGGAGATGATCTATCAGCTTAAAGGACACAACATCCTACTGAGTGCTGATGGCCCTCACAGGAACGTCCTGAAATTCAAGCCGCCGATGTGCTTCACTGAAGAGGATGCTAAGTTTGTGGTGGAAAAAATGGATGAGATTCTCACAGCTATTGAGAAGGCACTAGGGTTACAAATGGACAACAGCACAAATTCTGCTTCTGAAAATGGAATCAGCAAGAGGAAGAAGCCTTGTCAAACCAGTGAAGGAAATGAAGAGCAGGAATGTGTGCATGCAAATGAAAGCCATTTGAATGGTTCTGCGTGTGCTGAGAAGACTGTACAACCCCACAACCCAGTGCCTAACAAGAGAATTAGAACCTAAAGAAATCACTTGCTACCTCTTTGCTGGAAGTGTTCGTGTTGCACATCTTTATAGAGAACAATGCACATGTTTGGAATAAAGCATGTGGTCACAGTGAATCATTAATCACGAGAAAACATAATGGTAGAGTTCACTGCATAAATATTATACTGTATCGATTTCCATGTTTTAATGGTTAACCTGGGTTTTAACTATGCTAATGTGTTTACAAAATTATTGTACTTGAggggacattttaaaatgtatgggaATGATTTGTGATTTACTTGAGAGATACCATTTACCTTACCGAAAATAATGTGGTCACTGCATCTGCTTCAAGCTTTCTGGAGTCTGGAGTGTAAGATGAGTAAACACAGAGTGTCTCTTCTCACACTTGCCACATAAACTTCCCTGTTGCTGTTCTAGTTCACAGGATATATTTCGAATATGTGCATATCAACAAATGAACACCTACATGAGTCTGTGTTGGGTTCCCCTAATTTAGGATAAGATTACAAACTAAGGAAGTAAAAGccataatataatgttttttttgttttatctttctgtattttctatGTATTAATACTTTCACATTATGTATACTGTGGATTAATAACAGTCTGAAAGACCAGACTTAATGTTTTActtgtgctttgttttaaaatcatgtacaataaaaacactaaaaacattaaacaatatttgtataattaa

Function

GO: NA

KEGG:

id description
K14286 AGXT2L1, ETNPPL; ethanolamine-phosphate phospho-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115512 lncRNA upstream 6753 19611048 ~ 19611287 (+) True G92607
TU115499 lncRNA upstream 189392 19424684 ~ 19428648 (+) True G92596
TU115468 lncRNA upstream 199039 19396028 ~ 19419001 (+) False AMCG00017710
TU115466 lncRNA upstream 204084 19396028 ~ 19413956 (+) False AMCG00017710
TU115447 lncRNA upstream 234066 19348142 ~ 19383974 (+) True G92566
TU115529 lncRNA downstream 19489 19653205 ~ 19654620 (+) True G92620
TU115536 lncRNA downstream 21710 19655426 ~ 19659453 (+) True G92622
TU115583 lncRNA downstream 253353 19887069 ~ 19887346 (+) True G92664
TU115591 lncRNA downstream 268889 19902605 ~ 19948371 (+) True G92670
TU115592 lncRNA downstream 312972 19946688 ~ 19948371 (+) False G92670
AMCG00017714 mRNA upstream 8254 19601469 ~ 19609786 (+) True AMCG00017714
AMCG00017712 mRNA upstream 172942 19444528 ~ 19445098 (+) False AMCG00017712
AMCG00017710 mRNA upstream 184937 19402107 ~ 19433103 (+) True AMCG00017710
AMCG00017708 mRNA upstream 254798 19352888 ~ 19363242 (+) True AMCG00017708
AMCG00017705 mRNA upstream 621108 18969596 ~ 18996932 (+) True AMCG00017705
AMCG00017717 mRNA downstream 50077 19683793 ~ 19694234 (+) True AMCG00017717
AMCG00017721 mRNA downstream 138696 19772412 ~ 19773351 (+) True AMCG00017721
AMCG00017719 mRNA downstream 174020 19807736 ~ 19819378 (+) True AMCG00017719
AMCG00017718 mRNA downstream 200675 19834391 ~ 19841975 (+) True AMCG00017718
AMCG00017723 mRNA downstream 308131 19941847 ~ 19943897 (+) True AMCG00017723
TU115510 other upstream 89747 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 194361 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 206050 19402086 ~ 19411990 (+) False AMCG00017710
TU115411 other upstream 544378 19073238 ~ 19073662 (+) True G92538
TU115097 other upstream 2011832 17601535 ~ 17606208 (+) False AMCG00017668
TU115788 other downstream 1165879 20799595 ~ 20815546 (+) False AMCG00017747
TU115792 other downstream 1186795 20820511 ~ 20821947 (+) False AMCG00017747
TU116638 other downstream 5071663 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 9009014 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 9799696 29433412 ~ 29450347 (+) True G94275

Expression Profile