RNA id: AMCG00017714


Basic Information

Item Value
RNA id AMCG00017714
length 213
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00017714
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19601469 ~ 19609786 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGAACCAGGGCTGCATGGTCTTAAAGGAGTGAGAGGGGAGTCTGGGCACAAGGGTGACCGAGGACCCCTTGGCCTCCCTGGCATGGATGGTCCAGTTGGTCCTTCAGGTCCAGCGGGTCCAAAGGGTGACAGAGGTTTCCGGGGATTTAAGGGTGAAAAGGGGGAGCCAGGTCAGCCTGGCCTGGATGGGCTGGATGCCCCCTGTCAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115499 lncRNA upstream 172821 19424684 ~ 19428648 (+) True G92596
TU115468 lncRNA upstream 182468 19396028 ~ 19419001 (+) False AMCG00017710
TU115466 lncRNA upstream 187513 19396028 ~ 19413956 (+) False AMCG00017710
TU115447 lncRNA upstream 217495 19348142 ~ 19383974 (+) True G92566
TU115427 lncRNA upstream 402223 19191195 ~ 19199246 (+) True G92552
TU115512 lncRNA downstream 1262 19611048 ~ 19611287 (+) True G92607
TU115529 lncRNA downstream 43419 19653205 ~ 19654620 (+) True G92620
TU115536 lncRNA downstream 45640 19655426 ~ 19659453 (+) True G92622
TU115583 lncRNA downstream 277283 19887069 ~ 19887346 (+) True G92664
TU115591 lncRNA downstream 292819 19902605 ~ 19948371 (+) True G92670
AMCG00017712 mRNA upstream 156371 19444528 ~ 19445098 (+) False AMCG00017712
AMCG00017710 mRNA upstream 168366 19402107 ~ 19433103 (+) True AMCG00017710
AMCG00017708 mRNA upstream 238227 19352888 ~ 19363242 (+) True AMCG00017708
AMCG00017705 mRNA upstream 604537 18969596 ~ 18996932 (+) True AMCG00017705
AMCG00017706 mRNA upstream 694174 18896486 ~ 18907295 (+) True AMCG00017706
AMCG00017713 mRNA downstream 8254 19618040 ~ 19633716 (+) True AMCG00017713
AMCG00017717 mRNA downstream 74007 19683793 ~ 19694234 (+) True AMCG00017717
AMCG00017721 mRNA downstream 162626 19772412 ~ 19773351 (+) True AMCG00017721
AMCG00017719 mRNA downstream 197950 19807736 ~ 19819378 (+) True AMCG00017719
AMCG00017718 mRNA downstream 224605 19834391 ~ 19841975 (+) True AMCG00017718
TU115510 other upstream 73176 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 177790 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 189479 19402086 ~ 19411990 (+) False AMCG00017710
TU115411 other upstream 527807 19073238 ~ 19073662 (+) True G92538
TU115097 other upstream 1995261 17601535 ~ 17606208 (+) False AMCG00017668
TU115788 other downstream 1189809 20799595 ~ 20815546 (+) False AMCG00017747
TU115792 other downstream 1210725 20820511 ~ 20821947 (+) False AMCG00017747
TU116638 other downstream 5095593 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 9032944 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 9823626 29433412 ~ 29450347 (+) True G94275

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU84896 True 661 lncRNA 0.41 2 NC_047598.1 26558229 ~ 26559138 (-)
bowfin (Amia calva) TU84896 False 354 TUCP 0.55 3 CM030128.1 2706840 ~ 2710329 (+)
tiger barb (Puntius tetrazona) TU84896 True 1507 lncRNA 0.39 3 NC_056705.1 33584808 ~ 33591081 (+)