RNA id: AMCG00017715


Basic Information

Item Value
RNA id AMCG00017715
length 1660
RNA type mRNA
GC content 0.37
exon number 4
gene id AMCG00017715
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19651516 ~ 19654680 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttgttacgttttgtatttattaatgcaatgtACTGAAACCCTTTTGTCGGGGTACTAGGACCTCGTACTTCCTGGACACGTCTGGAGTTTTAAGGGAAGCTTGTTCGGGTGTGTGAGATCAGGGATCTGAATTTAGCATTTTAACAAGACACGAAGCATATTTACAGTCAGAATGGAGACTTTATACGGTCTTCCATTTATTGTGCTGGAATGTCCCAATATAAAGCTCAAAAAGCCTTCCTGGCTGCACATGCCTTCGGCTATGACTGTCTATGCTTTAGTTATCGTGTCGTACTTTCTCATTACTGGAGGCATAATCTATGATGTCATTGTTGAACCTCCCAGTGTGGGCTCCATGACGGATGAACATGGCCATCAGAGGCCAGTAGCCTTTTTGGCCTACAGAGTCAATGGACAATATATCATGGAAGGTTTGGCCTCCAGCTTTCTGTTCACAATGGGAGGCCTGGGATTTATAATACTGGACCGCTCCAATGCGCCAAACATCCCTAAGCTCAACAGGTTCCTGCTTCTCTTCATTGGGTTCGTCAGCGTACTCCTCAGCTTTTTCATGGCCAGAGTGTTCATGAGAATGAAACTGCCAGGATACCTCATGGGTTAAAGGTctgcaaaaaatatgaatgattttcGCAAGGGTCAGAAACATCATCAAGAATGGAGCAATATCTggaaagaatagaaaaaaagcTGCAGAAAAACCCGCTGGAACAGGAAGACAGACTGTCATTTGAAAAGGTTGGATTGTGATAGCGGGCTCCTTTTTCACAATAATCAGCCCACAATATGccattatgtttaattattctGATTTTAGGATGGCAATGTGCCTGTCTGGAACAAGCAACAacattttcagtgcattttgttttctttattatgaaattattttgttaaatattccTTAGCactgttgtattttgtgttccATTAGTCTTGCAGcatataacattataaataggcatttttaaattgttaaaaatcTCAACTGAAACTGATAATTGTatcattgcatttttaatggcaATGGATATTGGAACACAATTAtgaaaattactgttttaatatgctgtaaagattttttttttcttatcatttacatttttttaaattaaactacagtATAAATCGTTGAACCAGAGCTTCAGGATTTGTGTCCATCTGTCTGCTGTGTTGGCcagtttgtgctttttgtgaagagaagcagaaataaatgtttatcaGTCCAAAATGGTTCCCTTTTTGTCTGAATCTCCCCACCATAGTCATCTATTGTAGACTATTATGAACTGAAACATAGAGAAGATACTATTGGCATTGCTTTTCATAGGAAACTGTTTAATTTCTGAGAGTATGTGTGGGGGGTAAACAATTTGAATATAAGCAAGAAATGCACACATACTGGCATAGAGGGcttcaggaaaataaacacaaaatcctACTTCTGTTTCTGCCACAAATTATAGCTATTAGTCCTTGGCATTGTGCTATTTTGCAATACTGAATAATGCTAAATAacaatttcttaattaatctgaaacaccttttcttttcaatcacTCCTGTCCAAGTAAGATACTGTAGTGAAATCATATTATTTCTGGTGCAAAATTATAGATCTTTGTGTCTATTTCAACAT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115514 lncRNA downstream 33729 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 38334 19612705 ~ 19613182 (-) True G92608
TU115414 lncRNA downstream 525167 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 577651 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 800888 18850062 ~ 18850628 (-) True G92499
TU115574 lncRNA upstream 211292 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 212738 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 251312 19905992 ~ 19920152 (-) True G92682
TU115645 lncRNA upstream 647320 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA upstream 647320 20302000 ~ 20317431 (-) True AMCG00017725
AMCG00017711 mRNA downstream 217827 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017709 mRNA downstream 267433 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017707 mRNA downstream 448691 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017701 mRNA downstream 727080 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017700 mRNA downstream 739645 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017716 mRNA upstream 2253 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017720 mRNA upstream 41873 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017728 mRNA upstream 214319 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017724 mRNA upstream 234256 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017727 mRNA upstream 293512 19948192 ~ 19954812 (-) True AMCG00017727
TU115494 other downstream 232160 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 232160 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1188340 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2177177 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 3620611 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 3663446 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3663446 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3663446 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6357981 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6357981 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile