RNA id: AMCG00017716


Basic Information

Item Value
RNA id AMCG00017716
length 666
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00017716
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19656933 ~ 19659528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAACACTTTGAGTCTTCAATTTCTTCTACAAAACGTACCTGCACATAACTAATTGCAGAGAGATAATGAGGTTTTTAAAGCTGTAAGCATGCACATCACCccaaaaaacatgttattgtAATCACCATTACAGGAGGTGACAGAAGCGAATCTTGCCGTACAACATGTCGGCCTCCGTGCGGAGTTCTCTTTCCGGTTCAGCGGTGACTTCAACTCTCACCCTGACTGGAGCTCTTTCTCTTCCGGTTACGCTACCATCAGGTGTCAACATGGTTCAGCGTCTCACATACCGTCGTAGGCTGTCCTACAACACCGCCTCAAACAAAACTAGGCTGTCCCGAACCCCTGGTAACCGCATCGTGTACCTGTACACCAAGAAGGTGGGCAAAGCCCCCAAGTCTGCCTGTGGCATCTGCCCCGGACGCCTGCGTGGTGTGCGTGCTGTTAGACCCCAGGTGTTGATGAGGCTCTCCAAGACCAAGAAGCATGTCAGCAGAGCCTATGGTGGCTCCATGTGTGCAAAATGTGTGCGTGACAGAATCAAGCGTGCTTTTCTCATTGAAGAGCAGAAGATTGTTGTCAAAGTGCTGAAGGCACAGGCACAGAGCCAGAAGTctaagtaaatgtatttgtattgccacaataaatgattgaaaaaggata

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02915 RP-L34e, RPL34; large subunit ribosomal protein L34e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115514 lncRNA downstream 39146 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 43751 19612705 ~ 19613182 (-) True G92608
TU115414 lncRNA downstream 530584 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 583068 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 806305 18850062 ~ 18850628 (-) True G92499
TU115574 lncRNA upstream 206444 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 207890 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 246464 19905992 ~ 19920152 (-) True G92682
TU115645 lncRNA upstream 642472 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA upstream 642472 20302000 ~ 20317431 (-) True AMCG00017725
AMCG00017715 mRNA downstream 2253 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017711 mRNA downstream 223244 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017709 mRNA downstream 272850 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017707 mRNA downstream 454108 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017701 mRNA downstream 732497 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017720 mRNA upstream 37025 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017728 mRNA upstream 209471 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017724 mRNA upstream 229408 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017727 mRNA upstream 288664 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017726 mRNA upstream 313890 19973418 ~ 19986615 (-) True AMCG00017726
TU115494 other downstream 237577 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 237577 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1193757 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2182594 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 3626028 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 3658598 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3658598 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3658598 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6353133 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6353133 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_03173512_03177748.mRNA False 487 mRNA 0.47 5 CI01000344 3173486 ~ 3177748 (-)