RNA id: AMCG00017720


Basic Information

Item Value
RNA id AMCG00017720
length 6666
RNA type mRNA
GC content 0.50
exon number 48
gene id AMCG00017720
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19696553 ~ 19810128 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACGTGCTACGAAGTCTACCCGTCTCAAAGCAAGCGACGGTTTtgtgatgaaaatgaatatcCACTGGACCTAAACCCAGGTCCGGAAAGAGATGAAAGACTTAACCGCCTGGTGAAAAACTACTTTTTCCACGAAGTGCTGGATGTTGCTGTGCTCCGGTCCCCTGACGAACACCATCCAGTCGTGCGTAAAGCCCTCCACTGTGGGTTTCTTCCGGACCTGGGCACGGTGTCCAAGCTCCAGTTTCACCTGAACTGCGCCCTGCAACATGCAAATCGCACACTGAGGAGCTCAACTTTACCTCCATCTGCTACCTTCAACAATATACACCTTCTTACAGCAAAACCAGCGCCGTGCCATATCCCCGACCATACCGGCACGGCCCAGCGCATACTCACCGAGCTGGCCATGCTGGAGGCCACGCGTTACCGATTTTTCATGGAGAATTTGGCTGAGGAGCGAGGCACGACGCATGCGCGGTTTCTGTGCGCTGACAAGAGTCGCAGACACAGCAGGCGGAGGCGAGCCAATGAGACGGGCCGCAGCACCTCGCCTGCCCACCTAGAGAGGCCAGACACGAGTGGGACTCCTGGCCGGGGAGTGGGCAGCCTGGGAGGCCAGCCGACCGGCAAACCGGCAGACAGCGCACTTTTTTGCTCCTTTGTAAAATGACCATCTAAGATGTCGGAAGATTTAAAGAAAAGACTTGAATTCCCCAATTCTGTAATCCAGGCCCAGGCTGTGAGGAGTCTAGTGACTGCAGTGCTGAAAGAAAAAGGCCTCAATGAGAAGATTGTACAGTCCTCCAATCAGAGCCCCGCGCTGGAGCTGCTGTGGGAGAGGAGCTGCAGTGACAGCGCAGTGGTGCGGTCAGCCTGCTGTGAAGCCCTGGTCCTCCTCGTGGAACAGAACCATGCTGATCGTCAGTATGTGTTCAACAGCATCCTCAACCTTATTCCCTCCGCCAGAAATTTGCAAGGCCTGATAAAGGTGATTGGGAAGCTGCTACAGATCCAGGCCGCCCAGATACTAGAAGCTGAAGAAGGAGCCTTCTCCTGCCCTTACACTATAAGAAACCCTCCACATCCATACATAACTGTGCTTGAAAACCGACCAGACTGTTGGCCTGTGCTTCTGAGGGAGATTGGTGACTTTATTCAGCAGTGTGTAGATAAAATGGAGCCAGCCTATGTGACCATGCTAGCACCATTCCTCAGGTATTTGTACTGTGAGCCCATGCACTTACCTGAGCATGCCGAGCTGAGACAGAACCTGCTCAGGGTCCTGTTACCGCGCTGTCAGAcgaaggaggaagagaaggagcCCTCTGCAGTGACGCACAGTGTCCTCCAAGTGCTCTTTGACCTCGTTCCACACCTGCAGATTGCCAGTGTGACTCAAGTGTTAGAGTTGGGTCTGTTTGTGAAAGAGCTCTCTTCCAGTTTGATACCACACGCCAACTTTTGGAGAACTGAGTTGTGTCAGCTGTCCCTCCAGCTGCTGTGCGCCTGTGAGCTCAGCTTGAGGATCAGTGGAGACTGCTCTGCTTTGATTGACCTCATCGAGAGACATTTTCAAGTCTGTTCGGAGgaCTTTCCTTCCGAACAGATGATAGTTGGTCTTGCCTTGCTCTTACTGAGGGCCCCAGCAACACAACAGGCAGCCATTCTTAATCTTGCTTTGAAGATCCTCACTCCTTCCGAGATGCCAACATTACCAGTGTCTGCCCCAGTTCTGGTGTTGCCATTACTGCAGGTTTTGTCTTGCACAGCTCTAATGGAGGCATTATCGGACAGTCAAATTAAGGCCAGCAATCGACATCTGGCATCAACCCTGCTGCAAATTGTCCAAGGGGACGCCTACAGAGGGAAAAAGgatgcCATCAAGCTTTCATTCCCAATAAGTGACTGGTACAGCGTGGTGCTGATAACTACAAACTTACTGCACAGGCTCAATGAAGACCAAGCTGCCGCCTGCAACTGGTTGTGTTCTGTGCAGTCTGCTCTGCCTTTGAACGACTGCGTCCCTGGACATTTTCCTCTCCTTCTGGCCTTCCTCATTGTCAAAAGTGATGGAAAATGTTTGGAACTGGTGTTGAAAACTGTGATTGAACTGGCAAAAGCTGATCCCTCAAAAGTTCCAGACCTTGTTCCTGTTTTGATGTTCAAATTAGGAAAGATTTCTGACCCAGTTCTATCTCGTGCTGTGTTGTACACTTTGCCATTATTAGGGACTCACAAGtttTGCGTTCCTCAGATACTGCAAGCATTGCAGATGCTGGGAAGTGCACCAAAATTAAGGGCCGTGGTAATGAGGCTCATGACCTCCTTATGGGAGAAACAGGACCGTGTGTATCCAGACCTGCAGAAATTAATGGGAATGCTGGAGAAGTCTTCCATTGTGGTTGGGAAGGAGGAGAAGTGGGAGCAGATTTTGGCCAAAGCTGCGTGTATCCGGGACATCTGCAAACAAAGACCTTATCAACATGGCGGAGACATGCTGGCGGCCATCACTGAGACATTGACGCTGTGTTCCAAGAGTGACCAGGCCACACCCACGGCTCTGGTCCTTCAGGGACTGCATGAGCTGTGCCGTGCCGAGGTTGTTGACATACGGTCAACATGGAATGCCATCTCACCCAAGCTGAGCTGTGACTCGCGCCCTCTTGTTGTCAGAGCCCTGACTGAACTCTTTGCCCTGGTTCCAGCTTTGTCTGTGAAGACCGAGGAGTATGAGAAATTTAAAGACCAAGTTGTCAGCATTCTGTGGAACTATGCCCTGAATAAGgaCCCTCTGATTGCCATTTGTGGCTATAAAGCTCTCTGTGAGTTCCCAGACAAAGTGCACACAATACTCCATTTACCAGAACAGGCCCGTCCCCAGCTGAAACCTCCAGACAGTGAAGATGAGgcaaaagaggaggaggagaaggaggaagatCTATCTGTACCCGGCGCCTCCTACATCAGTCTTCTGTCTCTTACGCCTCCTGCAGTGTTATCTGCACTTGAAGCCTTTCTGACGTCGTTGGTGAAGCAGGAGATGGCGGAAATGCCGCGCGGGGTGTACCACTCGGCTCTGAGAGGAGCTGCCCTACGATCGGACCAAGGGAAAACTATCGCCGGGATTCCCGCTTTCATGCTGAAAACATATGAAAAGAACAAGCAGCCAGGTTTAAAGCCTGGCCTTGCagCTGGTCTGCTGCTGTGTTATGACCTGCCCATTCAGACTGACAGAGATGGAAGGCCAATTAATCGTTTCCTCGTTAGTAGAGGACGCTGCTATCAGCAGATGTTGGCAGCCCTTATTCAtgagGTAAACATCCAGCCCTCAGAATGGCATCGCTCCCTTCTCCTGCCACAGGGTTGGCGGGGGTTCATGAGCAGGGCCTACCACGCTGTCTTACAGGGTCGACAAGCAGAGATTGAGATGCAGCAGAAGCATGGCAAGGACAGCCCTGAGGAGCTGCAGTACAAGCAGTTTACAGCCTGGCTCTGGGTCAGAGACCAGCTGACTGATGTTGTCAAATCTGCAGcgaaGGACACTCCTGTCGTGCAGGGGAACTCTCTGTTAGCTCTGACTGGACTGGCAGTGGCTGTAGCCAAGTATGAAAACAGTCTGCCAACAGATGTTGAGGGAAACCCAGAAattggtGCTGATATACTGGCAACAAAGCACTGGCTTGCCATGGTATTGGATACTCTCTTGAGTATTGTCAGCAGCAGCTATCGCCCTAAAGGACGTGTATTTCCATGGTTTCAACATAGATCCTACTCTGGGGAGAACACCGCCAGTGCCATCGCGCGCTCCTGTGCTGCCCTGGCTCTGTCCCTGATGGTGCCCGTGTTGATCACCTCCCACAAGGAGAGCATAGAAGAAATACTCAACACGCTCGCTGCAGGGTTACCTGGGAGACCGAACGCAGACGAGTCCCAGGCTGTGCAGTTCCACACAGGCCTCGCCATGGGGATGTTCCTCTCCTGTTTGCATGAGGAGCGTATCAGCGATGTCTCGGGACAGAAGATGAATCTGCTCCTGATGAAATCCCTCGATGCGCTAGAGGGCTGCTGTTTTGATGACAGTTTGGAATACAATACTGGCTGCATCCTGGGAGTCGGTCTGGTGCTGTCGTTGCTGAGCCATGGCAGTCAGACGGAGTCGCGTGTGCATGTGGCCGTGACCCTAGAGAAGCTGCTCCACAGCCTGGCTGACAATGGCAGCCGTGGCAGGATGCTGCAGGAGGTTTTGGCATATTCAGTGGCTTCCGTCAGTGTGTCTGCTTTCAGTGCTGGCATTATTGATGCTGACAAAACTGAGGAAATCATGACCAAAATCCGAGTCATGACAGAGCAAAGCCAGCAGACACCAGGATTTGCCTTGGCTTTAGGTATGACTGTTCATGGACTGTCTACTTGTGGGCATGGTAAAGCTGAGGACTTTTATGGCAGACTTCTGGGTGCTTGGATTAAAATACTCCTTACTGAGGGATGTCCCACAATGCAGCGTCTGGCAGCTGTCAATGGTTTAGTTGCCCTAGCAGGATCTGAAAATTACCTTATTCAGCTCAAGTCTGAATCTGGTCAGTCCTCCCAGCAGCAGGGCCGGATGAATGAGGTCATCAGAGCAATAACTCAAATCATTACTTTCTCTAGTGCAATTGGCCTACAAACAAATGCCTCCTGTCTTATTGGACATCTTCATCTAGCAAACCTGTCATCCAGTCAAAGCAGGACATCAGTTCCTCCTGACTTTGGTTACTTGTCTGAGAAGAGTTTAATCAGACCTGCTGTGGATTACATCAGTGAAGCAGGAAAGAAAGGTCCAGAATTTATCCATCCCAGCCTTGTGAAAGTGGTTCTGGCTCCTCTTGCATCAGTGGGCAACAGTTTCCAGTACCCACCAATCAACTGGGGGGCAATTTTGTCCCCACTAATGAGGCTCAACTTtgGTGAGGAGATCCAGCACCACAGCCTCCAGCTGGCTGTAACCCAGGCCCAGTCCTCCCAGAGTGCCTCCATGTTCCTCGGGATGTGGCTGGTACCGCCACTTGTGAACAGTCTTAGTCTGAAGACAAAAGCTTACCTGTGCGAGTCGTTGTCGGTGTGGATGAAGCACGTTTCTGAGGATAAACTTCATTCATTTGTCGAGGCATTTGCAGTCCAGCACTTTGCAGCTGAAATCAGGCAGAAGCACCCTGGCATGTGTGCCTCCATCCTGGAGGGGCTAGCTCAGGCTATGAAGCTCCCCAACCCCACACAGTCCTGCTGGAGTGTCCTGAGCTCAGCCACTGAGAAGATCTTCAAGCTGCTGCCAGATGAAATTCAGgATAATGAGGTGGAGCTTTATATGGGAACTGCTAAATGTCTATCAGAAATGGCAGATACAGAGATTGACAGGATAGTTCAAGTTACTAAGGTTAACCTAGTGAAGACTGGCTTCATCATGGCATTCCTGGTGTCCCAGGGCAGGGTCCCACTACTGGGGCTCAACGATGTCATCGCGGCATCCTTAGGAAGCCCCCAGAAAGAGGTGGTCAGCTGGATGCTTCTCCAGAGCTTCTACCAGGCCCGCCTTGCAGCCAACCCAAACACCGGTGTGTTGAAGAGAATGGAGTGGCTTTTGGAGTTAATGGGTCATGTCAGAAATGTTGCTTATGGATCAACCCCTGTTGGAAATGGAGATATTAAGCAGGCAACTGACTTCCTGCTGCAAGTGTTTTGTGCTGCCGTGGTCTCGTGGGCTGACCATCCCTTGCCTTTGCTTCTTGGAGTCAGTGCTCAATGGTTGCCTTGGAAACAAGAATCTGCATTGCCCAATCGGCCACTTTCCCTTTTTGGAAAACACTCTGCGGATGAGCTGTCGGTCCTGCAGTGCCCACTGGCTCTGGCACATAGTATCCAACTGCTGTTGGCTAAAGAGCCTTGGAAAGGGCAGACTCAAAAGTTCTTAGACTGGCTGTTCACTATAGCAGAAGGTCCTAAGCAAGGCTTATCGGATACATCCATCACTAATACCAAAGCTGCTCTGTTAGCCTTGAGATCTCTCCCGGAATTCAAGAAGAAAGCTGTGTGGACTCGAGCTTATGGCTGGTAGTCGGGAAGTCATCAACTGCTTGTGAGAGACCAGACTCTGCTGTTCACTTTTCCACTGATATCACGCCAGGAATGCAGGCCAGCTGATGACTTCAGTACCACTGAGCCTGACACCTGCGTGAGGTGAAGATGAGCTCTCCATCAGGCTACCTGGTTTGAGGGATTTAGGACCAGTGACAGGGTAAAGCTGCTTATAGGGAAACATGCATGCTGACCAAAAAATATGGTATTATGGGTCTTTATCTGTTGTTATAATGTATAAGAGACATACATACTACTCTACGGTTTGGTGTAGCATTCGCCAAGTATCAGTCTTTACTCAGACCAGTATCCCAGCCTTCAAGACTGTCAGCAACTGGTAAGCATGTCCAAGTATTTATGCGTTCAAGGGCTTTAGGCCAATATTTTTGCTATATGTTACATgacatatcttttttttttttttttttgttaagataTCCCCaccttaaaacaataaaataaacatacagttaagagttgttgttttttgaaagaacaTGAGCCTCGTTAATAAATGGAGCAGAAACCGCTTGCCTCAAGCCACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115514 lncRNA downstream 78766 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 83371 19612705 ~ 19613182 (-) True G92608
TU115414 lncRNA downstream 570204 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 622688 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 845925 18850062 ~ 18850628 (-) True G92499
TU115574 lncRNA upstream 55844 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 57290 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 95864 19905992 ~ 19920152 (-) True G92682
TU115645 lncRNA upstream 491872 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA upstream 491872 20302000 ~ 20317431 (-) True AMCG00017725
AMCG00017716 mRNA downstream 37025 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017715 mRNA downstream 41873 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017711 mRNA downstream 262864 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017709 mRNA downstream 312470 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017707 mRNA downstream 493728 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017728 mRNA upstream 58871 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017724 mRNA upstream 78808 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017727 mRNA upstream 138064 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017726 mRNA upstream 163290 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017725 mRNA upstream 496198 20306326 ~ 20345619 (-) False AMCG00017725
TU115494 other downstream 277197 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 277197 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1233377 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2222214 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 3665648 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 3507998 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3507998 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3507998 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6202533 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6202533 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00065706 False 5811 mRNA 0.52 44 NC_007118.7 18878973 ~ 18983431 (+)