RNA id: AMCG00017724


Basic Information

Item Value
RNA id AMCG00017724
length 582
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00017724
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19888936 ~ 19890529 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCGCCACCAGTACACTGAAGAACAAGAACGCAGAATGTATTTCGGAGCTGATCGATCGCAGGTTCGACCAGGCGCACATAGATGAAGAGCTGGACTATTGGGATCACTGTCTGGTGGAGCCTAATCTCAATGGGGAGGTTTATGAAGACCGGACCTGCCAGCATCTGGCCAAAATGTTTGAGAGCTGCCTGTCACGAGCCAAAAAGACCAAGCTGCACTGTTCAGAGGTGCTGGTGCCAGAGAAGCTGACTAGGAGGATAGCACGGGATGTGCTACGCCTGTCATCTGGTGAGCCCTGTGGCCTCCGAGGCTGCATCCTCTACATCCACCTGGAGGTGGAGAACATGTGCAAGAAGCTGGACCGCATAATCTATGATGCCAGTGTGGTGCCAACCTTTGAGTTGACCCTAGTCTTCAAACAGGATGGCAGTGCCTGGCCCAGCCTCAGAGACTTCTTCCTCATCGGGGCGTGCTTCACACCAGGCTTCCGGCATGCACTGAAGCTCAGCCCTGGCTTCAGACTAATCAAAAAGAAACTGTACTCCTCGTCGGCTGGTACCGTTGTAGAGGAATACTAA

Function

GO:

id name namespace
GO:0009968 negative regulation of signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115579 lncRNA downstream 21300 19867418 ~ 19867636 (-) True G92660
TU115574 lncRNA downstream 22519 19865972 ~ 19866417 (-) True G92657
TU115514 lncRNA downstream 271149 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 275754 19612705 ~ 19613182 (-) True G92608
TU115414 lncRNA downstream 762587 19126060 ~ 19126349 (-) True G92541
TU115611 lncRNA upstream 15463 19905992 ~ 19920152 (-) True G92682
TU115645 lncRNA upstream 411471 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA upstream 411471 20302000 ~ 20317431 (-) True AMCG00017725
TU115649 lncRNA upstream 524777 20415306 ~ 20415612 (-) True G92714
TU115749 lncRNA upstream 733614 20624143 ~ 20624420 (-) True G92798
AMCG00017728 mRNA downstream 19479 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017720 mRNA downstream 78808 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017716 mRNA downstream 229408 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017715 mRNA downstream 234256 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017711 mRNA downstream 455247 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017727 mRNA upstream 57663 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017726 mRNA upstream 82889 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017725 mRNA upstream 415797 20306326 ~ 20345619 (-) False AMCG00017725
AMCG00017731 mRNA upstream 503348 20393877 ~ 20408258 (-) True AMCG00017731
AMCG00017729 mRNA upstream 567686 20458215 ~ 20482752 (-) True AMCG00017729
TU115494 other downstream 469580 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 469580 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1425760 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2414597 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 3858031 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 3427597 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3427597 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3427597 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6122132 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6122132 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile