RNA id: AMCG00017725


Basic Information

Item Value
RNA id AMCG00017725
length 3232
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00017725
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20302000 ~ 20358625 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTATCGTTAATGCCTATCAAAAGTATACCTTTACAtgacaatacatatatttagaaaatgacATTTCACGCACTATGGTGAGAGTCTAACGCTGGGTAACAATTCTGAGTATATCGCCGAGAATGTGCCAATTTTTAGCAGAACTTTATTgtaatgtcttttttattttctcattttcagaCTCCCAGCAGTCAGGAAGTCCAAGTAACAATGAGCCTGGCAAGAATCCTCCAGgCTACCTTGAGGACAGTTTTATAAAATCAGGAGTCTTCAGTGTATCAGAACTAGTGCGAGTGTCCAGAACACCCATCACCCAGGGAACCGGGGTGAATTTTCCAATCGGGGAGCTCCAGAGTCAGCCATACTACCATGACTTGAACTCCAGTGTAGGCCTCCACAGATCCCTGTCCTCTCCGCCTGGCAGCAAAAGGCCCAAGACTATTCCCATTGAGGACAGCATGGAGACCAGCCCTTCCGGAGACTTCTACTCTTCCCCCAGCTCGCCTGCCAGTGGCAGCAGGACATGGCACGAAAGAGATCAAGCAGATATGTCATCTCCCACAATGAAGAAGCCAGAGAAGCCATTGTTTAGCCCCACATCGCCCCAGGATTCTTCCCCGAGGTTGAGCACTTTCTCACAGCATCACCACCCAGGAATCACAGGGGTCGGACATAGTGTTATTTCGACGAGGAGCCCACCTCCTCCATCACCGTTGCAGTTTTCAGCACCAGCTATCCTCCCCCCTGCCCCGTCAACTTACTTCTCCCACCCCACCATTCGATACCCACCCCACCTGAACCCACAGGACACCCTGAAGAATTACGTACCATCATATGACCCGTCCAGCCCACAGACAAGCCAGCCTAACAGCAGCGGCCAAGTGGTGGGGAAAGTGCCCGGTCACTTCACCCCAGTGTTGGCACCATCTCCGCATCATGGGGTGCGACCCGTCACCCTGACCATGCCAGACACTAAACCCATCACTACATCCACAGAAGGTGAGCCAGCTTCACCTACCACAGCCACCTACTCAGCCCCAGGTACACCTACACCAAACAGGTTTGTGGGACTGAGCTCCAGAGACCCGGCTTTCTTACACCAGCAACAGCTGAGGATTTGTGACTGGACCATGAATCAAAACGGCAGGCATTTATACCCCAGTGCCAGTGAGGATACTTTGGGAATTACTTGGCAAagTCCTGGTACCTGGGCGAGCTTAGTTCCATTCCAAGTGTCGAACGGGACTCCGATTCTGCCAACAAATGTCCAGAACTACAGCATAAACATCATTGGTGAACCCTTCCTTCAAGCAGAAACAAGTAACTGAAGGCCGACAAAAGGAAGTGAGAACAGACAGAACTGAGAATTAATGACGATAAACCAGCAAGCAGCACTTATACAATCTCCAGTGCCTCGTTAGGGGGGCGCTGGCCAAGAACACTAACCGATTGGTTGAAGCACTCTGATAAGGTGATATTTGTCATGCCAGACAGCCTTTGTATATTGAAATCCCCCAGTTAAATACTGTGATATATCCAATACAACTTTAGATGCCTTAATGTTTTGCATGAAATGCTAGTTTGTATTAATCTTTTGATCATTCTTTTGGGAGCACTAGTCCTGGTTTACAAGCAGGTTAAATCATGAAGCTACAAAGGCTGGCTGGCAAATAGCAGAATTTAAGCTTCTTCTCGAGTTGAATTTGCTATCACTTATAGAGGCTCATGAATCAAACCATTCGCCACATTTCCATACCAACAATGttgaaaatcaaattattttcttcaatatgccacagttgtgtttttttctttataaatttATCTTAAACTTGTAATCCCGTTGATCCAGTGCTGATATTTAGTTTAAGGTAAAGGTTAGTATGTACACTAAGAGATTGAACTCTAAAaagtgataattaaaaaaatatataatcaaaaccTATATTATTAGGTTAGGATAATTTCCCCTTACAGTGCAAAATGCGTTTTGATATTTCccccaaaaaggaaaaaaaaaaatctctttaagAGGCAAgtgcaatttaaatttaattactGAAGGGAAACTATAGAAGTCTATCAGCCCTAAGACTCTAAATTGAGGGGGAtaaaattttgtttttgtttttttccaggaaaAAAACCCCGTCTAAAAACAATTTTGAGTTGTATCCTCAATTTTCAAGGGGAAAAATGGATCATGAAACGTAGACAAGTTTGTGCTTGAAAGGGAGTGTGTAACAGAACAGAACTAAACATGAACGAAACAGCACTTATATTTTATTGAGCCGTACCCTCTCCTGGAGGTagcctttatttattatgaGACAAACGGGGAATGAGAGACACACATTGTGTATAAATGGCTTATGATTCCGTATTCACAGCAAAGGAAGAGATTCATTTGGCCGTAAGCTTATGAAGCTactgtttacaaaacaaaacaaacaacaaaaaaataggaATGCAGGCtgttcaagtaaaaaaaaaaaaaaatcaaaaaacgAAAAAAGATGTGTATGTAGAGAATTCTGCACTCGACGCAACACTATCCTAAGGGTGCTGAATAGTTGCATGGTGCTTTGTGAACACATGTAATTCAACAGATCCCTTTGGTCACAAAAACTTGCAGCGTGCATGGCAGTTATTTTGCCTTTGCATCTCAACAGCAGATATATATAAACTACTCTTTCCAATAATCTTAATTTGCACGAAGATATATAGTCCACATTACGTGCCTTGCCTTTGAATATAAAAGAGACATCACTACACTTGTTTTTTGCTGCATTTATTACCATTTTaagaattaacatttttatgataaaaatattttgtactcTGGATGAAATTGTGACATCATTGATTTTTAACTACATTTACTACTTTATCTCACATTTATAATGCATATCATGGCTGTGTATAGTTGCCGTTTTAAAGTTTATAATCAACCagcattatttttcagtattttttggTGGTTTTTCTAataaccttttgttttgttttgttttgttttgttttgtttttgttatttcatcTTCCAATTACTATTTGGGGGGGGTTTTCAGATTTATAAGAATTATGCAATACCAAGTTTTGCCTATGTAGGTAGTGCTTTTAGctatattgattattataagCTAGTATGGAGATAGacaatattgtatacatttattttgtttctgatttttttttttttttttttttgttgttgtttgtttttgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115611 lncRNA downstream 386174 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 438690 19867418 ~ 19867636 (-) True G92660
TU115574 lncRNA downstream 439909 19865972 ~ 19866417 (-) True G92657
TU115514 lncRNA downstream 688539 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 693144 19612705 ~ 19613182 (-) True G92608
TU115649 lncRNA upstream 69687 20415306 ~ 20415612 (-) True G92714
TU115749 lncRNA upstream 278524 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 289053 20634672 ~ 20634880 (-) True G92800
TU115776 lncRNA upstream 326446 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 331040 20676659 ~ 20734422 (-) True G92823
AMCG00017726 mRNA downstream 319711 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017727 mRNA downstream 351514 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017724 mRNA downstream 415797 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017728 mRNA downstream 436869 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017720 mRNA downstream 496198 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017731 mRNA upstream 48258 20393877 ~ 20408258 (-) True AMCG00017731
AMCG00017729 mRNA upstream 112596 20458215 ~ 20482752 (-) True AMCG00017729
AMCG00017736 mRNA upstream 152648 20498267 ~ 20514665 (-) True AMCG00017736
AMCG00017734 mRNA upstream 174599 20520218 ~ 20550836 (-) True AMCG00017734
AMCG00017738 mRNA upstream 208048 20553667 ~ 20571410 (-) True AMCG00017738
TU115494 other downstream 886970 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 886970 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1843150 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2831987 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4275421 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2972507 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2972507 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2972507 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5667042 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5667042 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000346_00380599_00403533.mRNA True 2227 mRNA 0.45 8 CI01000346 379728 ~ 403872 (-)