RNA id: AMCG00017727


Basic Information

Item Value
RNA id AMCG00017727
length 407
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00017727
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19948192 ~ 19954812 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCTACTGCATCAGCACGCAAAGAAGTAATCCGCAACAAGATACGAGCCATTGGCAAAATGGCCAGGGTATTTTCAGTTCTAAGagaagagagtgagagtgtcCTTACACTAAAGGGTTTGACTCCAACCGGGATGCTTCCCAGTGGTGTGTTGTCAGGCGGGAAGGAGAAGCTACAAAATGCTACTATTGAGGCTATTGAGGCTGATGAAGCCATCAAAGGATTCTCACCTCAACATAAGATCACAAGCTTTGAAGAAGCCAAAGGCTTGGATCGCATCAATGAGAGAATGCCTCCCCGTAAGGACGCCATCCCATCCGATGCCAGCCTCAACTCGCTTAACAAGGCCATCTCCTCAGAGACCAATGGCACTGATAGCAAAGGCAGTAGTAGCAGCAACATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115611 lncRNA downstream 28040 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 80556 19867418 ~ 19867636 (-) True G92660
TU115574 lncRNA downstream 81775 19865972 ~ 19866417 (-) True G92657
TU115514 lncRNA downstream 330405 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 335010 19612705 ~ 19613182 (-) True G92608
TU115645 lncRNA upstream 347188 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA upstream 347188 20302000 ~ 20317431 (-) True AMCG00017725
TU115649 lncRNA upstream 460494 20415306 ~ 20415612 (-) True G92714
TU115749 lncRNA upstream 669331 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 679860 20634672 ~ 20634880 (-) True G92800
AMCG00017724 mRNA downstream 57663 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017728 mRNA downstream 78735 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017720 mRNA downstream 138064 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017716 mRNA downstream 288664 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017715 mRNA downstream 293512 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017726 mRNA upstream 18606 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017725 mRNA upstream 351514 20306326 ~ 20345619 (-) False AMCG00017725
AMCG00017731 mRNA upstream 439065 20393877 ~ 20408258 (-) True AMCG00017731
AMCG00017729 mRNA upstream 503403 20458215 ~ 20482752 (-) True AMCG00017729
AMCG00017736 mRNA upstream 543455 20498267 ~ 20514665 (-) True AMCG00017736
TU115494 other downstream 528836 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 528836 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1485016 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2473853 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 3917287 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 3363314 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3363314 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3363314 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6057849 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6057849 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile