RNA id: AMCG00017728


Basic Information

Item Value
RNA id AMCG00017728
length 417
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00017728
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19868999 ~ 19869457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggcTCTCGTCTGTTCATGCTCTGGCTGGTGGGAAAGCGGGGAAGGACTCGGGCAAGACGAAGACAAAGGCGGTGTCGCGCTCGCAGAGAGCCGGGTTGCAGGTCAGTACAGCCCCGTGTGCCGCTTCACATCGGCGGCAATATCGGTGTCTATCCCCGACCCGTGTCCTGTACGGTGGCCTGCTAGTGGAAACCCGACACGGCCGCAGCCGGAGCGGGGCGTCTGCGCTAGATGTGGCGCTTCCTCGTCCTCCGCGGTGCTAATCTTGCTCTCCTTGTCTTTCTCTTTGGATGGCGGGCAGTTCCCCGTGGGTCGCATTCACAGACACCTGAAATCGCGCACCACCAGCCACGGGCGCGTCGGGGCCACTGCGGCCGTGTACAGCGCGGCCATCCTGGAGTACCTGACCGCTGAG

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007275 multicellular organism development biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115579 lncRNA downstream 1363 19867418 ~ 19867636 (-) True G92660
TU115574 lncRNA downstream 2582 19865972 ~ 19866417 (-) True G92657
TU115514 lncRNA downstream 251212 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 255817 19612705 ~ 19613182 (-) True G92608
TU115414 lncRNA downstream 742650 19126060 ~ 19126349 (-) True G92541
TU115611 lncRNA upstream 36535 19905992 ~ 19920152 (-) True G92682
TU115645 lncRNA upstream 432543 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA upstream 432543 20302000 ~ 20317431 (-) True AMCG00017725
TU115649 lncRNA upstream 545849 20415306 ~ 20415612 (-) True G92714
TU115749 lncRNA upstream 754686 20624143 ~ 20624420 (-) True G92798
AMCG00017720 mRNA downstream 58871 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017716 mRNA downstream 209471 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017715 mRNA downstream 214319 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017711 mRNA downstream 435310 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017709 mRNA downstream 484916 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017724 mRNA upstream 19479 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017727 mRNA upstream 78735 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017726 mRNA upstream 103961 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017725 mRNA upstream 436869 20306326 ~ 20345619 (-) False AMCG00017725
AMCG00017731 mRNA upstream 524420 20393877 ~ 20408258 (-) True AMCG00017731
TU115494 other downstream 449643 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 449643 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1405823 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2394660 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 3838094 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 3448669 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3448669 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3448669 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6143204 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6143204 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile