RNA id: AMCG00017729


Basic Information

Item Value
RNA id AMCG00017729
length 1104
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00017729
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20458215 ~ 20482752 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCACGGAAGATGTTTGTCCTCAGCAGGATGCCGTACAAGGAGGTATTTTACTAAAGCGCCCTACAACGAAACACGGAAGAGCGCTGCTCACATTGCACTGCGGACACGGAAAGCGAGGGTACGACGAgATTTATCAAATTCACTCCAGGATACCCTCCCTCGCCCCCGCCATGGGTCTTCGCATTCACTTCGTCATTGACCCTATGGGCTGGTGCTGCATCAGCATGGTATTCTTCATTTGGCTATACAACTCCTTGTTCATCCCCAGACTGGTGCTGTTCCCCCATTTTGATGAAGGCCACATCTCAGTGGCTGTTGTGATCGGCTACTACGTGGCTTCACTTTTCTGTGTGACTGCCCTGGTCAGAGCCTCCATCGCTGACCCTGGCCGACTGGCACAGGACCCACAGATTCCACACACCGAGCGAGAGCAGTGGGAGCTGTGCAACAAATGTAACATGATGAGGCCCAAGAGATCACACCACTGCAGCCGCTGTGGCCACTGTGTCCGGAGGATGGATCACCACTGTCCATGGATTAATAATTGTGTCGGGGAGGACAACCACTGGCTCTTCCTGCAGCTTTGCTTCTACACACAAGTCTTGAGTCTGTTTACACTGTTGCTGGATTTCTGCCAGTACTATTACTTCCAGCCTTTAACAAAAGTCAACGAGGAGCTTTTCATATTCAGACATGAACTGGCCTTGCTCAGGATGTCCACCTTCATGGGTCTGCTGATGTTTGGCGGCATGAGTAGCCTCTTCTACACACAGGTCACTGGCATCCTCACAGACACGACAACCATTGAAAAAATGTCTCACTGCTATGAAGAATTAAGCTCTCCTTGCCTCATCTGCCTGTTCTGCTCCATTTACTTCCCTCTTCGCTCAGGCGACACTTCTGGCTCATGTCTAACGCGGTGCGGGCTGAAGGAGGGCTGCTCTCTGCGCAGTGTTGTGGCACATCCGTACGCTGCCGCCTCTGCCTCGGAGCACAGTGGTAAATGCGATCAAATTAAATTTCCTGACAGTctgctgtgtgagagagagcaggcCCACATGGCGCAGGCACTCCTGTCACACCATGCCACAGCTCCCTGA

Function

GO: NA

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115649 lncRNA downstream 42603 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 99590 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 140784 20302000 ~ 20317431 (-) True AMCG00017725
TU115611 lncRNA downstream 538063 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 590579 19867418 ~ 19867636 (-) True G92660
TU115749 lncRNA upstream 141391 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 151920 20634672 ~ 20634880 (-) True G92800
TU115776 lncRNA upstream 189313 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 193907 20676659 ~ 20734422 (-) True G92823
TU115794 lncRNA upstream 334923 20817675 ~ 20822960 (-) True G92836
AMCG00017731 mRNA downstream 49957 20393877 ~ 20408258 (-) True AMCG00017731
AMCG00017725 mRNA downstream 112596 20306326 ~ 20345619 (-) False AMCG00017725
AMCG00017726 mRNA downstream 471600 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017727 mRNA downstream 503403 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017724 mRNA downstream 567686 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017736 mRNA upstream 15515 20498267 ~ 20514665 (-) True AMCG00017736
AMCG00017734 mRNA upstream 37466 20520218 ~ 20550836 (-) True AMCG00017734
AMCG00017738 mRNA upstream 70915 20553667 ~ 20571410 (-) True AMCG00017738
AMCG00017735 mRNA upstream 88705 20571457 ~ 20584961 (-) True AMCG00017735
AMCG00017739 mRNA upstream 112560 20595312 ~ 20601401 (-) True AMCG00017739
TU115494 other downstream 1038859 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1038859 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1995039 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2983876 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4427310 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2835374 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2835374 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2835374 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5529909 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5529909 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile