RNA id: AMCG00017733


Basic Information

Item Value
RNA id AMCG00017733
length 3334
RNA type mRNA
GC content 0.38
exon number 16
gene id AMCG00017733
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20603355 ~ 20616229 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATATGGTGGAGACAATTTTGTCTGAAGAAGTTAAATCTGTCACCAGTGCAACAGAAATGCTCATGCAGAATCTGATGGCACTAGATCAGCCAGGGTGGTTTATAGCTTTTGTGGACATCCTGAATGCAGAAGgttACACCGGGCTTTGTGAGGCTATTAAACAATGGGACTTCAAAACAATTGAGAGTATGGAAccttttaaactgcttttagAACGCATTGAACAATCCATCACCAAACAGATAAAACCCACAGAAATTATACCTCTTATGGGAGAGTGCCTCTTTGACCGTGAATATGAAGAGATAAGAGCGgtgaCTGATCGTAAGGGGAACATTGCTGGAGCTCAGAAACTGATTGAATTATTGAAAAGATCAGACAAATGCAACTGGTACAAGTCCTTGACATTGGCCCTGCAGAGTTGCAATTATCAGACTGCTCTGGATTTAATGGACCACGACACAGGAGCCAGCAGTGAAGACAGTGATGGAATAAAGCTAAGAAATTATCAAAAAGAGCTCTGTATCTCCGCTTCTAGAGGCGAAAATACCATCATCTGTGCTCCAACAGgcTGTGGGAAAACAATCGTAGCTCTTGCTATCTGTGAAAATCACCTGAGAAGTAGTCCTAGACAGAAACCCAAGATTGTCTTCATGGCCACAAAGGTGGATGTATATGAGCAGCAGCACAAATTGTTCCTAAAGCATTTCGGAGAGGGAAATGAGGACGTTCGGGTTGCAGGTATCTGCGGTGAAATGGGAGATCATCTTCCTGTTGGAATGTATGTAGAAGAAAACGACATAATTGTGCTGACACCTCAGATTTTGGTGAATGCTCTGAAAAGTAAAGAGGTGCAATCACTATCCATCTTTACTCTAATGATATTTGATGAATGTCATAATACTACCGGAAAGCATCCCTACAATGTCCTTATGACCAACTACCTGGACTACAAAATGAGCAACAGGAATGCAGCCCTGCCACAGATCGTTGGCCTGACAGCTTCAGTTGGAATAGGCAATTTCAGGAATACAGAAGAGGCCACAAATAATATTTGTCAGTTATGTGCAAACCTGGATGTGAGAGTCATTTCAACTGTGCAGGAAAACGTGGAGGAACTCCGATCATTTGTACATAATCCTGAGAAAGATTTCTTCCCAGTGGAAAAACAATCCAATGATCCCTTTCTTTCCATAATTAGCAAAATAATGTCTAACATTGAAGACTTGGCAACAACCGTATACAACATAGAGTCTCTGTCGAACATTCAGACCAAAGATTATGGGACACAGAAGTATGAACAGTGGATTGTTGATGTGCAAAAGAAATGTCGAACACTGCACTTGAACGATAAAATGGAGGAGAGTCGTGTTTGCAGAGCCCTGTTCAATTACACTGAGCATCTAAGGAAATACAATGATGCTCTTATTATTAACGACGATGCGCGGACCAAGGATGCCCTGGATTACTTGGAAGCATTCTTTGAACAGGTCAGAAACGCCGGGTTTGATGAAACGGAACAGAAGTTAACAGCTTTCTTTGATGAGAACCCGAAGCTGAAGACCCTGAAGTACATCCTGGAGGAGGAGTACAGGAACAACAACCAAACCCGCACTGTGCTCTTCGTCAGGACTAGAGCCCTGGCAGACGCCATGAAGAACTGGATTGAAGAGAGTGAGTCTCTGAAGTTCCTTAAACCTGGAGTGCTAATAGGTCGCGGAAAGCGCTCTCATCAAACAGgGATGACATTTACATCCAAGAAGGGGGTACTGGATTCATTTAAAAGTTCAGATCAAAGTAAAATACTGATCGCCACCTCAGTGGCAGAAGAAGGGATTGATATTCCCCAGTGTAATCTGGTGCTGATGTACGAGTATGTTGGCAATGTGGTCAGGATGGTTCAAGTCAGAGGTCGTGGAAGAGCACAAGGCAGCAAGTGTTTCTTTGTGTCCAGTACAAAAGATCGCATTGAGAAGgagaaattaaatatgtacCGTGAAAAAATTGTGAATGAAGCCATCATTGAATTACAGAATTCCAAGGACTCCATGGTTGCTAAGATTGATACTTATCAAAGAGAAGACAAAAGGAGACGGGATTACATGAATTCAGCCCCACAAAGGCCATTAACAGATGCCAGCTTTGAACTCCTTTGCTCAAAATGCAAGACCTCAGCTTGTTTTACTGATGATATTAGAGTACTGCAGGATTCGCACCATATTGTTCTGGATAAAACCATCTTTGAGCGTTTCATCCAAAAGCCCCATGAAAAACCTAAGAACTATGGTGGGTtcaagaagaagatgaagatgtTTTGCAAGAAGTGTTCGCATGACTGGGGGATAATTGCCTCTTATATGAGCATTGATGATCTGCCAGTCATCAAAATAGACAGCTTTGTGGCTTTGAACTGTGTGACCAGAAAGCAACAGTATTTCAGAAGGTGGAGAGATGTCACATTTACTATGAAAACATTCGATATTACAGAAATATCTCCTTGctgaataatttcaaaaataatttgccATTTTGAATGTTACAATGATGATTAATGTACAACTTTGATTACTAAAGCTCCTGtgcatattttaatgaaataaatgtgcacacaatgatacacaTTCACAGAAGACTGCTGTTATATTCACATCTGAAACCATTATTGTGAGCAGTTAATGTTCATAGCACTAACAAATTATGGGTTTATGGCAAAGCAAAACTTATTTGATACTTGCTTTAAAATTCACTTCACTCAATTAAGCATTATATAAACTATACTTGCCTCATGTCTTatcttgttatatttttaaattgacgtactgtaaaaatagtttttactaTAACAATATAGTAACACTTACATAAATGATAATGTAGAAATGcactataatttaatttaattttgaattttctaatatctttaaatgcaacAGTGTAACAACATATAATATGCacttatattaatgtattactattaaataaatgcatatttcgttgttgttttctttaagaATCTGAATACATTAAGGCATTGAACTTTGTCTTGTTTGATCAGTTAAAAATTTAGAACTTTCATGTAATTTGATTGTACCATACCTATTATTTGTGATGTGACAAAGGCTATTTTTGTTACCTTCATGTCACTGGAAGGCAAAACATGGGAAGTCCTTATGTGTGCAGACTTCTTTAATACTGTAAAAGCAATATGTACTTTTTCAGTGACCATCATAAATTAATCTCTGCTTAATCTCTCATCTCTTATGACTTCCTTTAGcgttgtatttaaatatataatgtggaATCTTGcatattattgaaaatgaaatacaat

Function

GO:

id name namespace
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K12646 DDX58, RIG-I; ATP-dependent RNA helicase DDX58

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115649 lncRNA downstream 187743 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 244730 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 285924 20302000 ~ 20317431 (-) True AMCG00017725
TU115611 lncRNA downstream 683203 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 735719 19867418 ~ 19867636 (-) True G92660
TU115749 lncRNA upstream 7914 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 18443 20634672 ~ 20634880 (-) True G92800
TU115776 lncRNA upstream 55836 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 60430 20676659 ~ 20734422 (-) True G92823
TU115794 lncRNA upstream 201446 20817675 ~ 20822960 (-) True G92836
AMCG00017739 mRNA downstream 1954 20595312 ~ 20601401 (-) True AMCG00017739
AMCG00017735 mRNA downstream 18394 20571457 ~ 20584961 (-) True AMCG00017735
AMCG00017738 mRNA downstream 31945 20553667 ~ 20571410 (-) True AMCG00017738
AMCG00017734 mRNA downstream 52519 20520218 ~ 20550836 (-) True AMCG00017734
AMCG00017736 mRNA downstream 88690 20498267 ~ 20514665 (-) True AMCG00017736
AMCG00017741 mRNA upstream 4177 20620406 ~ 20622105 (-) True AMCG00017741
AMCG00017737 mRNA upstream 9855 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017749 mRNA upstream 36916 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017748 mRNA upstream 73992 20690221 ~ 20741395 (-) True AMCG00017748
AMCG00017751 mRNA upstream 131926 20748155 ~ 20774424 (-) True AMCG00017751
TU115494 other downstream 1183999 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1183999 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2140179 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3129016 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4572450 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2701897 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2701897 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2701897 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5396432 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5396432 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile