RNA id: AMCG00017734


Basic Information

Item Value
RNA id AMCG00017734
length 4139
RNA type mRNA
GC content 0.49
exon number 18
gene id AMCG00017734
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20520218 ~ 20550836 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAATTAGCAAGGGCTGGCCAAGGCTGGCCAATCGGCTCTCGGGTAAAACAGCTGAGCGGCCGGCGGAGAGGGGCTGTGAGAGCCGCACTGAGAGTGCAGAGAGAGGCGGAGAGGCGAGCCCGACCCAGCTTTAGATGGCGTTTCCCAGCGTCGCTGCTCTGGTGCTGTCGTCTTGAAACCCCGGCGTGGGCATTGCTGTGTACAGGACTGCGGCGGCCACTGTCCAGAAACCAAGATCCCAGGTTCAGGATGTCGGAAAATGAGTTGTCCAAGAAGATGCTGCGAGCCGTGCTGCAGTCAAACAAGAATGGATTATCTCTTACCCGGCTGCAGGCCGAGTACAAAGCCCTCACTGGCGACTTCATCCCACACAAGCAGCTGGGCTTCCCTTCCCTTGAGGGTTACCTGTGCAGCATTCCCTCAGTGGTCAGAATGGAGCACAGTCGTATGGGAGAGgttttctgCTTCGCTACAGTGTGTAATGAGACAGAACACATCGCCCAGCTAGTTGCTCGGCAGCGGACCTCTCGGAAGACGGGGAAATCGCAGTTGGTGAACTGTCAGATGAGGGTGAAACTTGCCACTTTTATGCCAAACGCGAAGCCAAGGTCGTCTCTCAGGCAGCCGGAGCACATGGGCCGCTCCAGCCGTAGCCTGACCCAGCTGTCCATAGGCAACCGGGGATATGGAGCTTTCAGCCATGCCTTGATGAGAGACGCTCAGCACGATGCAAAAATCACCACAGCCAACCAAAACCGAACCCCCACCATCCAAACTCGGAAACCGCCAACGCCAAGTGAGAAGTCTGACAAGAGAATTACTCTCCCTACCAGATTTCAGAGGGAACTACAAGCTCACCTTTCCAGAAACCCCCAGCAGACCAACGctaaTCTAAATGAAAGCCTTGCTCCAGGAAAAACCAGAACAACTCAAACCAGCACTTATAATACGCAGTTGGTCCAGAATCGTCTTAAAGACGTACTAAACAAGTACAGCAATGGATTTTGGGTCTCCAAGCTGCCACAGCTGTACAAGGAGCTGTATCACCAGGAGCTGCCTTCTGATGTCATAAGGGAGCTGGAACACTGGACCCATGTTTGCATAGTGGAAAAACCCTGTAGCACCAATCCCTCAGAGCTGCTCCTGTACCCTGCAAATGACTTGACTCCAGTGAAGACTGCTCCAGTCCCCAGCAAGATGTCCCCTGCCCTGGGGAAGCCAGTGTCTCCCACGAAGCCTGTGTCCTTGGTCTCCTCTAAGTCTGCAGTGGCTCCGGAAATCAAGCTGAAGCTGGCGGAGCTGTTGGTGAAATACAGCCATGGCCTCTGGGCCCACGCACTCCCCAAGCTCTTCCAAGATGCGTACAAGATGAAGTTCCCTGAGCATGTTCTCAATGACCTCTCACTGATCAGTGATGTCTGTACTGTTGACTATCCTATGCCTGACAACACCAAGAAAGCCATTCTGTATGCTCGAAGCAGCGAGGATGAGAACCAGAACAAGGTGGATTTAAAGATTCCCCGGGTCATTGAAACAGCAGGGCAGCGAATCAGCTCGGTTGCTGTCCCCCCCCTGGTGATCCCAAAGGAGGAGTACCCTTCAGTGCTGGTGGTGGAGGCCAGCAACACAAGCGACGTCATTCTCAGGTACATTGGAGAAGGCTACTCTCAGGCCCAGGAGGCACTGGAAGATAACATGAGAGAGTTCTACAACCAGGACAACAAGAAGCCTCTGCAGTCTCCGGTTCCTGGGCAGCTAGCGGCTGTCAGggctgaggaagaggaggagattTTAAGAGCCAGTGTTTCTGAGGTGATGACGGACAGGGTAAAGGTTTACTATGTGGATCATGGATTTTTTGAAGTCATCAACAAAGGCAAACTCCTGGAACTAGATGAAAAATTTTTTACTTTACCCTTCCAAgctgcaaaatgtaaattagcAGGACTCGAACCTTTCAGTAAGGAGCCTGCGGTCTTGAAACAATTTGAGTCAATAGCCTGTGGCAAGATCCTATTGGCAGAGAttttagagagagaggaggtgcCCCTGGTTGTCCTCTATGACACATCCCAGGATGATGATGTCAACATTAATGCGTCATGCATGAAGGCCTTGCAGGACAGATCTCTGGAGAACAGTCTACAGGTGAACAGTGTATATATGAACGTTGCCATCACCAACGTTTGTTCTGATGGAACCATTTACTGCCAGTTACCTTCACGTGGTCAGACGAAGTTGAATGAAATACtggagaaaactgaaaactacTTCCATTCCCGGGTGACATCTGAATTTTTGGTCTCAAAGCCGTTTTGTGGTAAATGCTGCCTATCCCGCTATAAAGGAAAATGGTCCCGTGTGGAGATCACCAACCTGCATGGCAGCCGTGTGCTGGACATTCAGTTTGTAGACCTTGGCGTCCCGGCTTCGGTGGAGGTTATCGAGCTCCGGGAAATCCCTCCTCCTTTTCTACGTGATCTCATCACCATTCCTCCACAGGCAATAAAGTGCTGTTTGGCGGACTTGTCCATCAGTGTTGGCTCGTGGACTCCAGAGGCTGTTCTGTGGCTCCGAGACACAGTGTTGAACTCCACTGATTGCAGCATGAAGGTCTCCAAACTGGATGAGACAAAGGGCTTAGTGAACATTTACCTGTTCACCTCCAAGAATTTCTACGACACAGAGCGCAGCATCAATTACCAAATTGCAGACTCGGACCTGTGGAAGCACCAGAAGGATGTCTTCCTGAGCAGCAGTTCGGTGAGCCCCATGAAGATGAGCAAAGAGCAGAGCAGTCCAGGCCCCAAGAAAATCATGCTTGATGCCAGAGACTGCAGTAGTCACACGTCTGCTCGGCTTCCCCCTCAGCTAGAGCTGCCACCGGTCGGCCAAAACATGGACATCTACGTGTCGGTGGCCTGCCACCCTGGTCACTTTGTCTTGCAGCCTTGGCAGGACCTGTATAAACTGGTGGTGTTGATGGGGGAGATGATCCTGTATTACAACAAAATGGAGGAGAAGCACATCCCTATTGAGAAGAACCAAATATATGCCGCTAAAGTGGAAAATAACTGGCAGCGTGTGCTCGTCAAAGGGATCCTGACCAATGGccttgtgtctgtgtatgaGCTGGACTATGGCAAGCATGAGCTGGTGAGCTGCACCAAGCTGCAGCCCTTGATAGAAGAGTTCAGACAACTTCCTTTCCAGGGGGTCACAGCACAGCTAGCCGGAGTGAAGCAGAAGCAGTGGTCAGAGGAGGCTTCCATTGTGTTCCGGAACCATGTGGAGAAGAAGCCGCTGGTGGCTCAGATCGAGGCTATCCAGGATGGGCCCCATCCCTGGGACAGGAAGGTGGTGGTCTTCCTTGTGGACACATCCCAGCAGGACACAGATGTCTGGGTGCATGACATCATGTCAGAGTTCACAGAGGAACTTACAAAAGCTGCATAGCCTTGTTCACAAAAAAAACGTCTCGGGAGAAAACCCCTCAGATATGAAGTACAGCAGGATGGTTCAGACGTTACTTATTGTTTGGTTCATGAAGTGGttctctaaaaatatatatctatagaatatatatctatatcttaAAAACGTAAATTGCTCTGACAAGCTGACTACATGTATTTTGTCACACAGCAATAATTAAGATAGTTTACAAAAGTTCAGTCTTGCAGGTTTAGCCATGTCTGGATACATTTCCTTACTTTCAGTTATGCCCTTTCAGTTAAATTTTCACTGCTTTGAGTGCTTGatttggacatttatttataatgtgttttttttttttttttttgcccttaAAATTCTTCACATTTTGAGGAATTGCTGCACCTTAAAAGATGTTTGGAGTTTACTtgacaaatatttgtatatgctTACACACAGTGGTTAAGCTTTgaataatacagttttgttttgttctattaAGTTTAATTCTCTTAGCAGTGATGAGACTGGCTGCGTTGCATTAAAACCTAGAACGAACGTATGATATGTGATGCCCAAAATTACCATCTACTTTATATACTTTTATGATGGAAGCACtgctacttttgttttgtttaagagtAATGTTTACTTAGTTCACTACCAATGtagaaatgcaatacaaataaagttcATTAAAGAA

Function

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115649 lncRNA downstream 104606 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 161593 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 202787 20302000 ~ 20317431 (-) True AMCG00017725
TU115611 lncRNA downstream 600066 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 652582 19867418 ~ 19867636 (-) True G92660
TU115749 lncRNA upstream 73307 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 83836 20634672 ~ 20634880 (-) True G92800
TU115776 lncRNA upstream 121229 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 125823 20676659 ~ 20734422 (-) True G92823
TU115794 lncRNA upstream 266839 20817675 ~ 20822960 (-) True G92836
AMCG00017736 mRNA downstream 5553 20498267 ~ 20514665 (-) True AMCG00017736
AMCG00017729 mRNA downstream 37466 20458215 ~ 20482752 (-) True AMCG00017729
AMCG00017731 mRNA downstream 111960 20393877 ~ 20408258 (-) True AMCG00017731
AMCG00017725 mRNA downstream 174599 20306326 ~ 20345619 (-) False AMCG00017725
AMCG00017726 mRNA downstream 533603 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017738 mRNA upstream 2831 20553667 ~ 20571410 (-) True AMCG00017738
AMCG00017735 mRNA upstream 20621 20571457 ~ 20584961 (-) True AMCG00017735
AMCG00017739 mRNA upstream 44476 20595312 ~ 20601401 (-) True AMCG00017739
AMCG00017733 mRNA upstream 52519 20603355 ~ 20616229 (-) True AMCG00017733
AMCG00017741 mRNA upstream 69570 20620406 ~ 20622105 (-) True AMCG00017741
TU115494 other downstream 1100862 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1100862 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2057042 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3045879 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4489313 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2767290 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2767290 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2767290 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5461825 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5461825 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile