RNA id: AMCG00017738


Basic Information

Item Value
RNA id AMCG00017738
length 2726
RNA type mRNA
GC content 0.45
exon number 19
gene id AMCG00017738
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20553667 ~ 20571410 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTAGAGCCAGCCCACAAGACCAGGAACAGGAAGAGCGAGTGCTTGAGCTTGTTTGTATGACCAGCTGAACAGCGTTTTTCTGCAGGAGGTATCTAGGGGTGGACGaacaATGTGCTGTGCAAGAtgaaacagcaacaaaaaaagaagaccTGAAATTCTTTTTAGTCTACTGTTGCACAGGAGCACAAGGGTCTGTCAATAAATGTCCTGGGGATTATTTGCTTCTGGTGATATCACTATAAAGTTTGGTTGCAGAGTAGACGTGGTCAAAGGTAATTCCCATATTCTTGGTGTTTATAGGACGGCTGTATGGTACATAGCTATAAAGAGAACTGTTCCGGGAACAGTCATGCTACCACTCACCTCGGATGAAAGAATGATGTTTCCTAACCAGACATGTGAAAATGAGGTGTCCATGGAGCTCTTCCTGCACTGTTCTCTTGTCCCCGCGTTCTTCATCGTGGCAGTGCTGTCTTTTCTGCAGAAGAGAGTTCACCAAATGGTGCTGGATGAGAAAATCCCCCTTATCAAGGGACGCTTCGGCATTGTTGTGCCATTAGACTTTATTGGAAGTCTCAGTAACAGATGGTCCTATGGCTTTGCCTTCGGAGCAGTGTCCGCTAGTGTGATACTACTGTTCACTGAGGAGTATGTACCATTTCATGTTCCAACGTGGGCTAAAGCTATTATGTACTTTGTGGGAGCTATTGAAGTGGGACTGTCCTACTTCCCTTTCTTTGCTTGCCTTTCTACAAACTTCCGGGTAGTTGGAGGAGTGCTGGGGATCTTATACACTCTGACCTGGATAAGTGTTACACTTTGGGATCTAGTGACATGTCCTAGCGGTCAGGTACTCGGCCAATACCAGAAAGTTATTTTCCAGTGGCCATGTATCCTGTGCCTGATCTTCCTGCTGTGCCGTTTTGTCCACATGCTGGTCAAGGCGTTACGTATTCATCTCCAAATAGAGAGGGAGGAGGAGAAAGAGCAGCTGTTGCAGACATACCAGGCTCAGTATGTGCAGACCTTGCTGAGGAGACCCCCTTCTGGGGAGTTGAAGAAGAACTGGtttcaaaggaaaatatatgACTGGGACCCTTATTTCAAGTTCCCTAACAGAATAATTGGCACTTCTATCATTTCTCTAGTTGGCTTGTATATTTTTACTCTGGCAGACTACAGCATCAGTAACTATGCCTTTGATCAACTGGATTTTTTGACAGAAGCCCTGAAGGATCTATCTTCATCCAGCAATCAAACAGGGAATATATTGGCAGCGTTAATCCCTCAATTTGAGGAGTTTAATGTGGTAGCCAGAGGTGCCTGGTTGGCCACAACGTTTTTATCTAGTCTGACCTCTGTCTCCTACATTTTTCATGTGTTAGCCTGTTACAGgAAGCACCTGAGGCGGTTATGGGCTGGACAGAAAGGATTTCTACCAGAACAGTTTCACAACCCCAGCCCTGCAGGCAGTGTGGCTGCCATTGTGAGGTATTCGGGATGGCAAATAGCCTTTACGTTATGGGGTTACTTGATTGTTCATTTTGTGCAGTTCCTGTTTTCTCTGATACTTGCTTATGGATTGATTCTGCCAATCGCGAATGGACTGGTGGTGCTTCAGGTTATCCTTGTTCAGGTTTTCTTCCTTCAAGATAAGATTTCACCAACAGATAAACAGAAGCCATTAGCACTAAACAACAGGAAAGCTTTCCATAACTTCAactatttcttcttcttctacaaTGTGATCTTGGGTATGAGCAGCTGCATTTTAAGGCTGCTGTTCAGCTTTGTTGTGGGCACGTGGCTGGTGGCACGCATTGACCGCACAGTCATGCAAAAAGGGTACGAGGGCTTGGACCCAGGGTACAAAACCTGGATTGGCATGATATTTGCTGACCATTACCACAGCAATCCTGTCATGATTTGCTTCTGTCATCTACTGTTAGTTGAAAATCTTGAGAAGCAAAAAATAAGGACTTCAGCGTATTCCTCGTTTCATAACCTCTCACCTGAGCCAGCAGTGAACAGTAAAGCCAGAGGGAGGTGGATGCTGGTTTATACTCTGTTGAGGAACCCCAAGCTCATACTACTGCGCAAACGCAGGGGGTCTTTGAGCAATTCAGGGGCGCAGAGAGCCAACCTGGAAACTGTGATCCTGGCCTATGCGTTGGCCTCACGCTACAGGGACCCCACAGAGACAGATGCAGTCGACATGCTGACCAGACAGCATCTGGACATGGTGCTACCCACAGACACCACAGACACCACAGAGGTGCCCCACACTTCGTAAACATGATCACCCTCGCCTCGGGCTGTTGATAGCCCAGCCAGTCTAACTAAAGTCTCCTCTGTTACATAGATGAGGGCCACACAGGTTCTATAGAAGGGGTGTGGAAACTACCATCCAAAGTTTAGAAGAAGAAGTCCATGCCTCAAGATGCAATGAGGAGTCAAAACACTTGAAGCTGTCCATCAGCTAACCAGTACAgtctttcaaaaatgttttctgaaactgCTATCCTCCCGGTAGAAATGTGAATAGTCTTACACAGTGGTAGTGTGAGGTTTTAATTTGCCCTTCCAGTAACAAAGCACCAAAGCACCAACAATTGTTGATGgagattttatttcttaattttctttttaaattacagagaAACTGTAGTTTTGTGGTAATATCTCATATGGTACTTAATTTTGATTGTACAATTTACTTTAgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115649 lncRNA downstream 138055 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 195042 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 236236 20302000 ~ 20317431 (-) True AMCG00017725
TU115611 lncRNA downstream 633515 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 686031 19867418 ~ 19867636 (-) True G92660
TU115749 lncRNA upstream 52733 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 63262 20634672 ~ 20634880 (-) True G92800
TU115776 lncRNA upstream 100655 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 105249 20676659 ~ 20734422 (-) True G92823
TU115794 lncRNA upstream 246265 20817675 ~ 20822960 (-) True G92836
AMCG00017734 mRNA downstream 2831 20520218 ~ 20550836 (-) True AMCG00017734
AMCG00017736 mRNA downstream 39002 20498267 ~ 20514665 (-) True AMCG00017736
AMCG00017729 mRNA downstream 70915 20458215 ~ 20482752 (-) True AMCG00017729
AMCG00017731 mRNA downstream 145409 20393877 ~ 20408258 (-) True AMCG00017731
AMCG00017725 mRNA downstream 208048 20306326 ~ 20345619 (-) False AMCG00017725
AMCG00017735 mRNA upstream 47 20571457 ~ 20584961 (-) True AMCG00017735
AMCG00017739 mRNA upstream 23902 20595312 ~ 20601401 (-) True AMCG00017739
AMCG00017733 mRNA upstream 31945 20603355 ~ 20616229 (-) True AMCG00017733
AMCG00017741 mRNA upstream 48996 20620406 ~ 20622105 (-) True AMCG00017741
AMCG00017737 mRNA upstream 54674 20626084 ~ 20627983 (-) True AMCG00017737
TU115494 other downstream 1134311 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1134311 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2090491 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3079328 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4522762 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2746716 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2746716 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2746716 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5441251 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5441251 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile